miRNA display CGI


Results 41 - 60 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23748 3' -52.2 NC_005261.1 + 130482 0.71 0.844228
Target:  5'- gGCGUGCcUCggCGGCGAGGGCcccGACGa -3'
miRNA:   3'- gUGCGCGcAGuaGUCGCUCUUG---UUGC- -5'
23748 3' -52.2 NC_005261.1 + 120289 0.71 0.835847
Target:  5'- aGCuGCGCGUguUCuuCGAGGGCGGCGa -3'
miRNA:   3'- gUG-CGCGCAguAGucGCUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 105260 0.71 0.835847
Target:  5'- -cCGCGCGaCAggcUCGGCGGGcGGCAGCGc -3'
miRNA:   3'- guGCGCGCaGU---AGUCGCUC-UUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 14186 0.71 0.835847
Target:  5'- gGCGCGgGUCAggccCAGgGAGGAaGACGg -3'
miRNA:   3'- gUGCGCgCAGUa---GUCgCUCUUgUUGC- -5'
23748 3' -52.2 NC_005261.1 + 54896 0.71 0.82727
Target:  5'- gCGCGCGCGUgCcgCAGCGcGcgUAGCGa -3'
miRNA:   3'- -GUGCGCGCA-GuaGUCGCuCuuGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 92458 0.71 0.82466
Target:  5'- cCACGgGCGUCGUCcggaugAGCGGcaccgcgagcucgcGGACGGCGg -3'
miRNA:   3'- -GUGCgCGCAGUAG------UCGCU--------------CUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 105141 0.7 0.882942
Target:  5'- gGCGCGCG-CAgguccucgCGGCucGAGGGCGGCGu -3'
miRNA:   3'- gUGCGCGCaGUa-------GUCG--CUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 118661 0.7 0.882942
Target:  5'- cCGCGCGC-UCGg-GGCuGAGGGCGGCGg -3'
miRNA:   3'- -GUGCGCGcAGUagUCG-CUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 11849 0.7 0.890002
Target:  5'- gGCGCGCGUUcgCgAGCGcGAGCGucagcuGCGg -3'
miRNA:   3'- gUGCGCGCAGuaG-UCGCuCUUGU------UGC- -5'
23748 3' -52.2 NC_005261.1 + 58211 0.7 0.890002
Target:  5'- gCGCGCGCGcCAgCAGCGcGcccGCGGCGg -3'
miRNA:   3'- -GUGCGCGCaGUaGUCGCuCu--UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 73494 0.7 0.890002
Target:  5'- gGCGCGCGgacgCGGCGAGGAUcccacuuaaGGCGu -3'
miRNA:   3'- gUGCGCGCaguaGUCGCUCUUG---------UUGC- -5'
23748 3' -52.2 NC_005261.1 + 94901 0.7 0.890002
Target:  5'- aCACGCGCGcgCuggaGGCGAGGaaggagcgcuucGCGACGg -3'
miRNA:   3'- -GUGCGCGCa-Guag-UCGCUCU------------UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 75069 0.7 0.882942
Target:  5'- cCGCGCGCGc---CGGCGGGGGCucGGCGg -3'
miRNA:   3'- -GUGCGCGCaguaGUCGCUCUUG--UUGC- -5'
23748 3' -52.2 NC_005261.1 + 29337 0.7 0.882942
Target:  5'- cCGCGUGCGcuUCggCGGCGcGGGCGACa -3'
miRNA:   3'- -GUGCGCGC--AGuaGUCGCuCUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 103853 0.7 0.882942
Target:  5'- uGCGCGCGagCcgCGGCGgcggcGGGGCGGCGc -3'
miRNA:   3'- gUGCGCGCa-GuaGUCGC-----UCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 28241 0.7 0.882942
Target:  5'- gGCGCGCG-CGaUAGCGGGGGCuGCu -3'
miRNA:   3'- gUGCGCGCaGUaGUCGCUCUUGuUGc -5'
23748 3' -52.2 NC_005261.1 + 5987 0.7 0.871159
Target:  5'- -cCGCGCGUCuccgcuccucccgCGGCGAGGGCuccgGCGa -3'
miRNA:   3'- guGCGCGCAGua-----------GUCGCUCUUGu---UGC- -5'
23748 3' -52.2 NC_005261.1 + 100663 0.7 0.868121
Target:  5'- gGCGCGCGUCGcgggguUCGcgcGCGAGuGCAccGCGg -3'
miRNA:   3'- gUGCGCGCAGU------AGU---CGCUCuUGU--UGC- -5'
23748 3' -52.2 NC_005261.1 + 46833 0.7 0.868121
Target:  5'- gGCGCGCGUgcUCGGgaaCGAGGugGGCGu -3'
miRNA:   3'- gUGCGCGCAguAGUC---GCUCUugUUGC- -5'
23748 3' -52.2 NC_005261.1 + 64862 0.7 0.894124
Target:  5'- cCGCGuCGCGUCccagaucagcggCGGCGGGAGCGcCGg -3'
miRNA:   3'- -GUGC-GCGCAGua----------GUCGCUCUUGUuGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.