miRNA display CGI


Results 1 - 20 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23748 3' -52.2 NC_005261.1 + 66474 0.84 0.227876
Target:  5'- gGCGCGCGUCcucgcgGUaCAGCGAGAGCGGCa -3'
miRNA:   3'- gUGCGCGCAG------UA-GUCGCUCUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 74271 0.82 0.298252
Target:  5'- gCGCGCGCGUCcgCGGCGGGcGgGGCGg -3'
miRNA:   3'- -GUGCGCGCAGuaGUCGCUCuUgUUGC- -5'
23748 3' -52.2 NC_005261.1 + 108453 0.82 0.312726
Target:  5'- aGCaGCGCGUCGUCGGCGAGGAUcuccGCGu -3'
miRNA:   3'- gUG-CGCGCAGUAGUCGCUCUUGu---UGC- -5'
23748 3' -52.2 NC_005261.1 + 104182 0.79 0.419482
Target:  5'- gCGCGCGgGUCGUCgGGCG-GGACGGCGu -3'
miRNA:   3'- -GUGCGCgCAGUAG-UCGCuCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 116549 0.78 0.475653
Target:  5'- cCGCGCGCGUCAUacaagggaaAGCGGaGGCGACGa -3'
miRNA:   3'- -GUGCGCGCAGUAg--------UCGCUcUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 89855 0.77 0.525175
Target:  5'- cCGCG-GCGUCAUCGGCGAGuACuGCa -3'
miRNA:   3'- -GUGCgCGCAGUAGUCGCUCuUGuUGc -5'
23748 3' -52.2 NC_005261.1 + 112918 0.77 0.545537
Target:  5'- uGCGUGCG-CGagGGCGAGGGCGGCGc -3'
miRNA:   3'- gUGCGCGCaGUagUCGCUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 93108 0.76 0.565109
Target:  5'- uCGCGCGCGUCGUCGcCGGaaaaugcGAACAGCa -3'
miRNA:   3'- -GUGCGCGCAGUAGUcGCU-------CUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 76042 0.76 0.566145
Target:  5'- -cCGCGCGcCAUCAGCGuGGcCGGCGg -3'
miRNA:   3'- guGCGCGCaGUAGUCGCuCUuGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 104329 0.76 0.575486
Target:  5'- aCGCGCGCGUCcagcggccggccGUCGcgcagcgccgcccGCGAGAACAGCc -3'
miRNA:   3'- -GUGCGCGCAG------------UAGU-------------CGCUCUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 112068 0.76 0.60789
Target:  5'- gGCGUGCccUCGUCGGCGAGGGCGccACGu -3'
miRNA:   3'- gUGCGCGc-AGUAGUCGCUCUUGU--UGC- -5'
23748 3' -52.2 NC_005261.1 + 96946 0.76 0.60789
Target:  5'- cCACGgGCG-CAUCGGCG-GGGCAGCc -3'
miRNA:   3'- -GUGCgCGCaGUAGUCGCuCUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 52461 0.75 0.639425
Target:  5'- gGCGCGCGUCAggauGCGGuuGCGGCGg -3'
miRNA:   3'- gUGCGCGCAGUagu-CGCUcuUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 98900 0.75 0.649935
Target:  5'- gACGCGCGUgAaCAGCGGGu-CGGCGg -3'
miRNA:   3'- gUGCGCGCAgUaGUCGCUCuuGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 103488 0.75 0.649935
Target:  5'- gCugGCGCaagacGUCGUCGGCGccgcGGACGGCGg -3'
miRNA:   3'- -GugCGCG-----CAGUAGUCGCu---CUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 134789 0.74 0.670904
Target:  5'- --aGCGCGacccUCAgcucggcCAGCGAGAGCGACGa -3'
miRNA:   3'- gugCGCGC----AGUa------GUCGCUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 75391 0.74 0.670904
Target:  5'- gGCGCGCGcCAUCGaCGAGGGCG-CGg -3'
miRNA:   3'- gUGCGCGCaGUAGUcGCUCUUGUuGC- -5'
23748 3' -52.2 NC_005261.1 + 93481 0.74 0.6803
Target:  5'- gGCGCGCGUCGcccgCGGCGAagcgcgcGAACcGCGg -3'
miRNA:   3'- gUGCGCGCAGUa---GUCGCU-------CUUGuUGC- -5'
23748 3' -52.2 NC_005261.1 + 47334 0.74 0.681342
Target:  5'- gGCGCGCG-CGUCGGCGAcGAcGCAGuCGa -3'
miRNA:   3'- gUGCGCGCaGUAGUCGCU-CU-UGUU-GC- -5'
23748 3' -52.2 NC_005261.1 + 86266 0.74 0.702081
Target:  5'- gCACGCGUgccgGUCGUCGcGCGAGcACAGCc -3'
miRNA:   3'- -GUGCGCG----CAGUAGU-CGCUCuUGUUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.