miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23748 3' -52.2 NC_005261.1 + 63968 0.74 0.712362
Target:  5'- gCugGUGCGUCAgcgcCAGCGGGcuCAGCu -3'
miRNA:   3'- -GugCGCGCAGUa---GUCGCUCuuGUUGc -5'
23748 3' -52.2 NC_005261.1 + 3880 0.73 0.742733
Target:  5'- gCACgGCGCG-CAgcUCGGCGAGcGCGGCGc -3'
miRNA:   3'- -GUG-CGCGCaGU--AGUCGCUCuUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 12964 0.73 0.742733
Target:  5'- gGCGCGCG-CAccccagaCAGCGAGGGCcGCGa -3'
miRNA:   3'- gUGCGCGCaGUa------GUCGCUCUUGuUGC- -5'
23748 3' -52.2 NC_005261.1 + 59572 0.73 0.742733
Target:  5'- gCGCGCGCG-CcgCAGCGGGuGCcGCGc -3'
miRNA:   3'- -GUGCGCGCaGuaGUCGCUCuUGuUGC- -5'
23748 3' -52.2 NC_005261.1 + 63792 0.73 0.742733
Target:  5'- gCGCGCGCGgcugCGUgAGCGuGAACccGACGc -3'
miRNA:   3'- -GUGCGCGCa---GUAgUCGCuCUUG--UUGC- -5'
23748 3' -52.2 NC_005261.1 + 122650 0.73 0.742733
Target:  5'- gGCGCGCGUaCGUgGGCGcgaAGAGCAucACGu -3'
miRNA:   3'- gUGCGCGCA-GUAgUCGC---UCUUGU--UGC- -5'
23748 3' -52.2 NC_005261.1 + 4523 0.73 0.762487
Target:  5'- -cCGCGCGggcgCcgCGGCGAGGGCGcCGg -3'
miRNA:   3'- guGCGCGCa---GuaGUCGCUCUUGUuGC- -5'
23748 3' -52.2 NC_005261.1 + 1400 0.72 0.772185
Target:  5'- gGCGcCGCGgccgCGgcggCGGCGGGGGCGGCGc -3'
miRNA:   3'- gUGC-GCGCa---GUa---GUCGCUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 43592 0.72 0.772185
Target:  5'- uGCGCGaCGcCGUCuccGGCGAGGAgGGCGa -3'
miRNA:   3'- gUGCGC-GCaGUAG---UCGCUCUUgUUGC- -5'
23748 3' -52.2 NC_005261.1 + 39352 0.72 0.781752
Target:  5'- uGCGCGCGgcggcagccgccUCAUCGGCGgccgGGGAgGGCGg -3'
miRNA:   3'- gUGCGCGC------------AGUAGUCGC----UCUUgUUGC- -5'
23748 3' -52.2 NC_005261.1 + 127659 0.72 0.781752
Target:  5'- gGCGCGCGgguUCggGGCGGGAcgGCGGCGg -3'
miRNA:   3'- gUGCGCGCaguAG--UCGCUCU--UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 136478 0.72 0.791177
Target:  5'- uCGCGCGCGggCAgCAGCGAGcagcuCGGCGc -3'
miRNA:   3'- -GUGCGCGCa-GUaGUCGCUCuu---GUUGC- -5'
23748 3' -52.2 NC_005261.1 + 104074 0.72 0.791177
Target:  5'- --aGCGCGUCcagcUCGGCGgacAGGGCGGCGg -3'
miRNA:   3'- gugCGCGCAGu---AGUCGC---UCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 135257 0.72 0.800451
Target:  5'- gGCGCGCGgauggaCAUCAuGCGgccugugcAGAACGGCGg -3'
miRNA:   3'- gUGCGCGCa-----GUAGU-CGC--------UCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 94633 0.72 0.800451
Target:  5'- gGCGC-CGUCGUCGGCGcgcgcGAACAuGCGg -3'
miRNA:   3'- gUGCGcGCAGUAGUCGCu----CUUGU-UGC- -5'
23748 3' -52.2 NC_005261.1 + 50997 0.72 0.809563
Target:  5'- gGCgGCGCGUgGgcgCGGCGGGAGCucGGCGa -3'
miRNA:   3'- gUG-CGCGCAgUa--GUCGCUCUUG--UUGC- -5'
23748 3' -52.2 NC_005261.1 + 101304 0.72 0.818506
Target:  5'- gAUGCGCGcCGUUAGCGGGuGCGAg- -3'
miRNA:   3'- gUGCGCGCaGUAGUCGCUCuUGUUgc -5'
23748 3' -52.2 NC_005261.1 + 92458 0.71 0.82466
Target:  5'- cCACGgGCGUCGUCcggaugAGCGGcaccgcgagcucgcGGACGGCGg -3'
miRNA:   3'- -GUGCgCGCAGUAG------UCGCU--------------CUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 54896 0.71 0.82727
Target:  5'- gCGCGCGCGUgCcgCAGCGcGcgUAGCGa -3'
miRNA:   3'- -GUGCGCGCA-GuaGUCGCuCuuGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 105260 0.71 0.835847
Target:  5'- -cCGCGCGaCAggcUCGGCGGGcGGCAGCGc -3'
miRNA:   3'- guGCGCGCaGU---AGUCGCUC-UUGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.