Results 61 - 80 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 64862 | 0.7 | 0.894124 |
Target: 5'- cCGCGuCGCGUCccagaucagcggCGGCGGGAGCGcCGg -3' miRNA: 3'- -GUGC-GCGCAGua----------GUCGCUCUUGUuGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 91393 | 0.7 | 0.896823 |
Target: 5'- cUACGUGauCGUCGcgccCGGCGAGGACGugGa -3' miRNA: 3'- -GUGCGC--GCAGUa---GUCGCUCUUGUugC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 79065 | 0.7 | 0.896823 |
Target: 5'- gCGCGCGCGUgGUgAuCGGGuACAGCGc -3' miRNA: 3'- -GUGCGCGCAgUAgUcGCUCuUGUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 75597 | 0.7 | 0.896823 |
Target: 5'- uCGCGCGCG-CcgCGGaCGcGGACGGCGu -3' miRNA: 3'- -GUGCGCGCaGuaGUC-GCuCUUGUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 71504 | 0.7 | 0.896823 |
Target: 5'- uGCGCGCGaaaGUCGGCGGGcucguccgcguACGACGc -3' miRNA: 3'- gUGCGCGCag-UAGUCGCUCu----------UGUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 126784 | 0.69 | 0.903401 |
Target: 5'- cUAC-CGCGUCugcGUCuGcCGAGAGCAGCGc -3' miRNA: 3'- -GUGcGCGCAG---UAGuC-GCUCUUGUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 13070 | 0.69 | 0.903401 |
Target: 5'- cCGgGCGCGUCcgccggcccGUCGGCGG--GCGGCGg -3' miRNA: 3'- -GUgCGCGCAG---------UAGUCGCUcuUGUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 83357 | 0.69 | 0.909731 |
Target: 5'- -cCGCaggaagGCGUCcacGUCGGCGAGcGCGGCGa -3' miRNA: 3'- guGCG------CGCAG---UAGUCGCUCuUGUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 82610 | 0.69 | 0.915813 |
Target: 5'- cCGgGCGCGUgAgccgccggaUCAGCGAGGcCGACa -3' miRNA: 3'- -GUgCGCGCAgU---------AGUCGCUCUuGUUGc -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 83758 | 0.69 | 0.915813 |
Target: 5'- gGCGCGCcacggccggGUCG-CAGCGcccGAGCAGCGc -3' miRNA: 3'- gUGCGCG---------CAGUaGUCGCu--CUUGUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 88383 | 0.69 | 0.921072 |
Target: 5'- aGCGCGCGcccaagguguaccUCGaCGGCGAGGagcACGACa -3' miRNA: 3'- gUGCGCGC-------------AGUaGUCGCUCU---UGUUGc -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 39232 | 0.69 | 0.921644 |
Target: 5'- uCGCGCGCGcCGgcgaggucucCGGCGAGGucucCAGCGa -3' miRNA: 3'- -GUGCGCGCaGUa---------GUCGCUCUu---GUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 20836 | 0.69 | 0.921644 |
Target: 5'- -cUGCGCGU--UC-GCGGGGGCAGCGu -3' miRNA: 3'- guGCGCGCAguAGuCGCUCUUGUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 87474 | 0.69 | 0.921644 |
Target: 5'- gGCGCGCGUCAgguUCGGCGcGGccguGCuGGCGc -3' miRNA: 3'- gUGCGCGCAGU---AGUCGCuCU----UG-UUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 34234 | 0.69 | 0.921644 |
Target: 5'- gACGCGgcCGUCAUCuggGGCGaAGAcuACGACGc -3' miRNA: 3'- gUGCGC--GCAGUAG---UCGC-UCU--UGUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 13134 | 0.69 | 0.927222 |
Target: 5'- gGCGCGUGUgGUCGGUGAcGGCG-CGc -3' miRNA: 3'- gUGCGCGCAgUAGUCGCUcUUGUuGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 77759 | 0.68 | 0.932548 |
Target: 5'- cUACGCaGCcggggCGGCGGGGACGACGa -3' miRNA: 3'- -GUGCG-CGcaguaGUCGCUCUUGUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 90120 | 0.68 | 0.932548 |
Target: 5'- gACGCG-GcCcgCGGCGAGGGCGAgGa -3' miRNA: 3'- gUGCGCgCaGuaGUCGCUCUUGUUgC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 93360 | 0.68 | 0.937621 |
Target: 5'- aGCGCGCGcCAgugcgcCGGCGuGAGCAGg- -3' miRNA: 3'- gUGCGCGCaGUa-----GUCGCuCUUGUUgc -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 62118 | 0.68 | 0.939581 |
Target: 5'- cCACGCcguccugcaggcccuGCGUCAgcagguuggggaUCAGCGAcAGCAGCa -3' miRNA: 3'- -GUGCG---------------CGCAGU------------AGUCGCUcUUGUUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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