Results 21 - 40 of 154 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 60045 | 0.66 | 0.979961 |
Target: 5'- gGCGC-CGaCGgcggCGGCGAaGAGCGGCGg -3' miRNA: 3'- gUGCGcGCaGUa---GUCGCU-CUUGUUGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 31438 | 0.66 | 0.979961 |
Target: 5'- gCugGCgGCGcCGccCGGCGAGGACgAGCGc -3' miRNA: 3'- -GugCG-CGCaGUa-GUCGCUCUUG-UUGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 55208 | 0.66 | 0.979961 |
Target: 5'- --aGCGCGgauccggCGgcccgaggCGGCGAGGGCGGCa -3' miRNA: 3'- gugCGCGCa------GUa-------GUCGCUCUUGUUGc -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 18838 | 0.66 | 0.977626 |
Target: 5'- uCGCGCucGUGUCcaCAGCGuGGAGCGugGa -3' miRNA: 3'- -GUGCG--CGCAGuaGUCGC-UCUUGUugC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 93541 | 0.66 | 0.977626 |
Target: 5'- cCGCGCGCGcCGcccagUAGCGGucGACGGCGg -3' miRNA: 3'- -GUGCGCGCaGUa----GUCGCUc-UUGUUGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 66029 | 0.66 | 0.977626 |
Target: 5'- --gGCGCGUCguaGUCGGCGGccACGGCc -3' miRNA: 3'- gugCGCGCAG---UAGUCGCUcuUGUUGc -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 69420 | 0.66 | 0.977626 |
Target: 5'- aCACGCGcCGgcgCAUCAcgGAGAcggGCAGCGc -3' miRNA: 3'- -GUGCGC-GCa--GUAGUcgCUCU---UGUUGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 86092 | 0.66 | 0.977626 |
Target: 5'- -cCGCGCGuucUCGUCGGCGcccGGGCGuCGg -3' miRNA: 3'- guGCGCGC---AGUAGUCGCu--CUUGUuGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 93764 | 0.66 | 0.977626 |
Target: 5'- cCGCGCGCG-CG-CGGCGuc-GCAGCa -3' miRNA: 3'- -GUGCGCGCaGUaGUCGCucuUGUUGc -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 60240 | 0.66 | 0.975097 |
Target: 5'- gGC-CGCcuccgCcgCGGCGGGAGCGGCGg -3' miRNA: 3'- gUGcGCGca---GuaGUCGCUCUUGUUGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 21695 | 0.66 | 0.975097 |
Target: 5'- --aGCGCGUCGcgGGCGAGcGCuucACGg -3' miRNA: 3'- gugCGCGCAGUagUCGCUCuUGu--UGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 81426 | 0.66 | 0.975097 |
Target: 5'- aCAgGCgGCGUCGUCGGCcgccccGCGGCGg -3' miRNA: 3'- -GUgCG-CGCAGUAGUCGcucu--UGUUGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 83304 | 0.66 | 0.975097 |
Target: 5'- uGCGCgGgGUCGUgCAGCucGGGCGGCGc -3' miRNA: 3'- gUGCG-CgCAGUA-GUCGcuCUUGUUGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 52969 | 0.66 | 0.974833 |
Target: 5'- cCGCGCcggugcgGCGcCGgcaGGCGGGGGCGGCGc -3' miRNA: 3'- -GUGCG-------CGCaGUag-UCGCUCUUGUUGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 6409 | 0.67 | 0.972365 |
Target: 5'- cCGCGCGCGUUGgcccggccugcUC-GCGAGGGCGGucCGg -3' miRNA: 3'- -GUGCGCGCAGU-----------AGuCGCUCUUGUU--GC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 49268 | 0.67 | 0.972365 |
Target: 5'- gGCGCGCa-CGUCcGCGAGGAaGGCGc -3' miRNA: 3'- gUGCGCGcaGUAGuCGCUCUUgUUGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 13278 | 0.67 | 0.972365 |
Target: 5'- cCACGC-UGUUGUUGGCGGGGcgcagguguGCGACGg -3' miRNA: 3'- -GUGCGcGCAGUAGUCGCUCU---------UGUUGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 5485 | 0.67 | 0.972365 |
Target: 5'- uCGCGCGCGcCGgggggUAGCuGGGGccgcgGCAGCGg -3' miRNA: 3'- -GUGCGCGCaGUa----GUCG-CUCU-----UGUUGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 50573 | 0.67 | 0.972365 |
Target: 5'- aCGCGCcugGCGUCcgCcgcgAGCGGGGAgGGCa -3' miRNA: 3'- -GUGCG---CGCAGuaG----UCGCUCUUgUUGc -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 107530 | 0.67 | 0.972081 |
Target: 5'- gGCaGCGCGUCggCGGCcaccagcacguccGAGAgcacgGCAGCGg -3' miRNA: 3'- gUG-CGCGCAGuaGUCG-------------CUCU-----UGUUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home