miRNA display CGI


Results 41 - 60 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23748 3' -52.2 NC_005261.1 + 72203 0.67 0.969424
Target:  5'- cCGCGCGCGg---CAGaaAGAACAugGu -3'
miRNA:   3'- -GUGCGCGCaguaGUCgcUCUUGUugC- -5'
23748 3' -52.2 NC_005261.1 + 109842 0.67 0.969424
Target:  5'- uCugGCGUGcCGUUGGUggcggcuccuGGGGGCAGCGg -3'
miRNA:   3'- -GugCGCGCaGUAGUCG----------CUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 83643 0.67 0.969424
Target:  5'- --aGCGCGUaCGUCAGCGGcGugaGGCGg -3'
miRNA:   3'- gugCGCGCA-GUAGUCGCU-CuugUUGC- -5'
23748 3' -52.2 NC_005261.1 + 59453 0.67 0.969424
Target:  5'- aGCaGCGCGgCcgCGGCGucggGGGGCAGCGc -3'
miRNA:   3'- gUG-CGCGCaGuaGUCGC----UCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 3426 0.67 0.969424
Target:  5'- aGCGCGCGggccagCGUCcaGGCGGGcGCG-CGg -3'
miRNA:   3'- gUGCGCGCa-----GUAG--UCGCUCuUGUuGC- -5'
23748 3' -52.2 NC_005261.1 + 67306 0.67 0.969118
Target:  5'- gCGCGCGCcgccGUCGgccgccgccgcgcUCAGCcgcaGGAACAGCGc -3'
miRNA:   3'- -GUGCGCG----CAGU-------------AGUCGc---UCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 133718 0.67 0.966266
Target:  5'- gGCGCcgucuaCGUCGgggCGGCGcGGACAACGc -3'
miRNA:   3'- gUGCGc-----GCAGUa--GUCGCuCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 71945 0.67 0.966266
Target:  5'- cCGCGCGCcccacuggCGUCGGCGcGGGGCG-CGg -3'
miRNA:   3'- -GUGCGCGca------GUAGUCGC-UCUUGUuGC- -5'
23748 3' -52.2 NC_005261.1 + 79821 0.67 0.966266
Target:  5'- uGCGCGCGgCGgcgCGGCGgccAGcGCAGCGc -3'
miRNA:   3'- gUGCGCGCaGUa--GUCGC---UCuUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 59772 0.67 0.966266
Target:  5'- cCAUGUGC-UCGgccgCAGCGAcGGCGGCGg -3'
miRNA:   3'- -GUGCGCGcAGUa---GUCGCUcUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 63028 0.67 0.966266
Target:  5'- gGCGCcgGCGcCcgCGGCGAGGcggucgcgcaGCAGCGc -3'
miRNA:   3'- gUGCG--CGCaGuaGUCGCUCU----------UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 69298 0.67 0.966266
Target:  5'- gGCGCgggGCGcCGguggCGGCGGGAGCGGgGg -3'
miRNA:   3'- gUGCG---CGCaGUa---GUCGCUCUUGUUgC- -5'
23748 3' -52.2 NC_005261.1 + 71345 0.67 0.962885
Target:  5'- --aGCGCGUCcUCGGUGAGcgccGAgAGCGc -3'
miRNA:   3'- gugCGCGCAGuAGUCGCUC----UUgUUGC- -5'
23748 3' -52.2 NC_005261.1 + 134075 0.67 0.962885
Target:  5'- -uCGCGCGgcUCAUguGCGAGcucuCGGCGc -3'
miRNA:   3'- guGCGCGC--AGUAguCGCUCuu--GUUGC- -5'
23748 3' -52.2 NC_005261.1 + 108179 0.67 0.962885
Target:  5'- gGCGCGCGgCcgCGgcuccgggcGCGAGAGCuGCGc -3'
miRNA:   3'- gUGCGCGCaGuaGU---------CGCUCUUGuUGC- -5'
23748 3' -52.2 NC_005261.1 + 10586 0.67 0.960746
Target:  5'- aAUGCGaCGUgagcggcagcgacucCAgCAGCGAGGACGACu -3'
miRNA:   3'- gUGCGC-GCA---------------GUaGUCGCUCUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 89111 0.67 0.959274
Target:  5'- gCGCGCGCGUgGcacugCGcGCGccGGAGCAGCa -3'
miRNA:   3'- -GUGCGCGCAgUa----GU-CGC--UCUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 67117 0.67 0.959274
Target:  5'- gGCGCGCG-CAgugCGGCGGcccGAccGCGGCGc -3'
miRNA:   3'- gUGCGCGCaGUa--GUCGCU---CU--UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 52181 0.67 0.959274
Target:  5'- uGCGUGCGuUUAUUauGGCGAGccccGCGGCGg -3'
miRNA:   3'- gUGCGCGC-AGUAG--UCGCUCu---UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 47148 0.67 0.959274
Target:  5'- aGCGCcgGCGUCggCGGCcGAGAccacCAGCGg -3'
miRNA:   3'- gUGCG--CGCAGuaGUCG-CUCUu---GUUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.