miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23748 3' -52.2 NC_005261.1 + 72448 0.68 0.955429
Target:  5'- gCGgGgGCGcCcgCGGCGAGcGCGGCGa -3'
miRNA:   3'- -GUgCgCGCaGuaGUCGCUCuUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 15696 0.68 0.951345
Target:  5'- aGCGCgaGCGUugCGUCGGCuGGGugGACGg -3'
miRNA:   3'- gUGCG--CGCA--GUAGUCGcUCUugUUGC- -5'
23748 3' -52.2 NC_005261.1 + 93720 0.68 0.951345
Target:  5'- -uCGU-CGUCGUCGGCGGcGGCAGCGc -3'
miRNA:   3'- guGCGcGCAGUAGUCGCUcUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 118698 0.68 0.948778
Target:  5'- aCGCGCgGCGUgGUCcugcucagcgucgcgGGCGGGcACGGCGu -3'
miRNA:   3'- -GUGCG-CGCAgUAG---------------UCGCUCuUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 92085 0.68 0.948778
Target:  5'- aCACGCGCGUCgcgcacgcccccGUCccgcagcacgugguaGGCGAaGAAUAGCu -3'
miRNA:   3'- -GUGCGCGCAG------------UAG---------------UCGCU-CUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 81544 0.68 0.947018
Target:  5'- gAC-CGCGUagagCAGCGAGAAC-ACGu -3'
miRNA:   3'- gUGcGCGCAgua-GUCGCUCUUGuUGC- -5'
23748 3' -52.2 NC_005261.1 + 3545 0.68 0.947018
Target:  5'- --gGCGCG-CAgcgCGGCGGGcGCGGCGc -3'
miRNA:   3'- gugCGCGCaGUa--GUCGCUCuUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 17173 0.68 0.947018
Target:  5'- gCGCGgGCGUgggcagcccugCcgCGGCGGcGAGCAGCGc -3'
miRNA:   3'- -GUGCgCGCA-----------GuaGUCGCU-CUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 49104 0.68 0.947018
Target:  5'- aGCGCGCG-CAgCAGCuccucGAGcGCGGCGg -3'
miRNA:   3'- gUGCGCGCaGUaGUCG-----CUCuUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 67398 0.68 0.947018
Target:  5'- cCGCGCGCGcCAggacCAGCGccgccAGCAGCGc -3'
miRNA:   3'- -GUGCGCGCaGUa---GUCGCuc---UUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 4440 0.68 0.942444
Target:  5'- --aGgGCGUCAgCAGCGGGcccuccAGCGGCGg -3'
miRNA:   3'- gugCgCGCAGUaGUCGCUC------UUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 32914 0.68 0.942444
Target:  5'- gGCGCGCGUgGggGGCGGcGGGCGGgGg -3'
miRNA:   3'- gUGCGCGCAgUagUCGCU-CUUGUUgC- -5'
23748 3' -52.2 NC_005261.1 + 133058 0.68 0.942444
Target:  5'- uGCGCgGCGUUggCGGCGAGuacguCAGCu -3'
miRNA:   3'- gUGCG-CGCAGuaGUCGCUCuu---GUUGc -5'
23748 3' -52.2 NC_005261.1 + 57448 0.68 0.942444
Target:  5'- cCGCGCGaCGgCGUCcGCGaAGAGCAcGCGg -3'
miRNA:   3'- -GUGCGC-GCaGUAGuCGC-UCUUGU-UGC- -5'
23748 3' -52.2 NC_005261.1 + 62118 0.68 0.939581
Target:  5'- cCACGCcguccugcaggcccuGCGUCAgcagguuggggaUCAGCGAcAGCAGCa -3'
miRNA:   3'- -GUGCG---------------CGCAGU------------AGUCGCUcUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 93360 0.68 0.937621
Target:  5'- aGCGCGCGcCAgugcgcCGGCGuGAGCAGg- -3'
miRNA:   3'- gUGCGCGCaGUa-----GUCGCuCUUGUUgc -5'
23748 3' -52.2 NC_005261.1 + 77759 0.68 0.932548
Target:  5'- cUACGCaGCcggggCGGCGGGGACGACGa -3'
miRNA:   3'- -GUGCG-CGcaguaGUCGCUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 90120 0.68 0.932548
Target:  5'- gACGCG-GcCcgCGGCGAGGGCGAgGa -3'
miRNA:   3'- gUGCGCgCaGuaGUCGCUCUUGUUgC- -5'
23748 3' -52.2 NC_005261.1 + 13134 0.69 0.927222
Target:  5'- gGCGCGUGUgGUCGGUGAcGGCG-CGc -3'
miRNA:   3'- gUGCGCGCAgUAGUCGCUcUUGUuGC- -5'
23748 3' -52.2 NC_005261.1 + 20836 0.69 0.921644
Target:  5'- -cUGCGCGU--UC-GCGGGGGCAGCGu -3'
miRNA:   3'- guGCGCGCAguAGuCGCUCUUGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.