miRNA display CGI


Results 81 - 100 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23748 3' -52.2 NC_005261.1 + 20836 0.69 0.921644
Target:  5'- -cUGCGCGU--UC-GCGGGGGCAGCGu -3'
miRNA:   3'- guGCGCGCAguAGuCGCUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 87474 0.69 0.921644
Target:  5'- gGCGCGCGUCAgguUCGGCGcGGccguGCuGGCGc -3'
miRNA:   3'- gUGCGCGCAGU---AGUCGCuCU----UG-UUGC- -5'
23748 3' -52.2 NC_005261.1 + 34234 0.69 0.921644
Target:  5'- gACGCGgcCGUCAUCuggGGCGaAGAcuACGACGc -3'
miRNA:   3'- gUGCGC--GCAGUAG---UCGC-UCU--UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 88383 0.69 0.921072
Target:  5'- aGCGCGCGcccaagguguaccUCGaCGGCGAGGagcACGACa -3'
miRNA:   3'- gUGCGCGC-------------AGUaGUCGCUCU---UGUUGc -5'
23748 3' -52.2 NC_005261.1 + 82610 0.69 0.915813
Target:  5'- cCGgGCGCGUgAgccgccggaUCAGCGAGGcCGACa -3'
miRNA:   3'- -GUgCGCGCAgU---------AGUCGCUCUuGUUGc -5'
23748 3' -52.2 NC_005261.1 + 83758 0.69 0.915813
Target:  5'- gGCGCGCcacggccggGUCG-CAGCGcccGAGCAGCGc -3'
miRNA:   3'- gUGCGCG---------CAGUaGUCGCu--CUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 83357 0.69 0.909731
Target:  5'- -cCGCaggaagGCGUCcacGUCGGCGAGcGCGGCGa -3'
miRNA:   3'- guGCG------CGCAG---UAGUCGCUCuUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 13070 0.69 0.903401
Target:  5'- cCGgGCGCGUCcgccggcccGUCGGCGG--GCGGCGg -3'
miRNA:   3'- -GUgCGCGCAG---------UAGUCGCUcuUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 126784 0.69 0.903401
Target:  5'- cUAC-CGCGUCugcGUCuGcCGAGAGCAGCGc -3'
miRNA:   3'- -GUGcGCGCAG---UAGuC-GCUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 79065 0.7 0.896823
Target:  5'- gCGCGCGCGUgGUgAuCGGGuACAGCGc -3'
miRNA:   3'- -GUGCGCGCAgUAgUcGCUCuUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 75597 0.7 0.896823
Target:  5'- uCGCGCGCG-CcgCGGaCGcGGACGGCGu -3'
miRNA:   3'- -GUGCGCGCaGuaGUC-GCuCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 71504 0.7 0.896823
Target:  5'- uGCGCGCGaaaGUCGGCGGGcucguccgcguACGACGc -3'
miRNA:   3'- gUGCGCGCag-UAGUCGCUCu----------UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 91393 0.7 0.896823
Target:  5'- cUACGUGauCGUCGcgccCGGCGAGGACGugGa -3'
miRNA:   3'- -GUGCGC--GCAGUa---GUCGCUCUUGUugC- -5'
23748 3' -52.2 NC_005261.1 + 64862 0.7 0.894124
Target:  5'- cCGCGuCGCGUCccagaucagcggCGGCGGGAGCGcCGg -3'
miRNA:   3'- -GUGC-GCGCAGua----------GUCGCUCUUGUuGC- -5'
23748 3' -52.2 NC_005261.1 + 11849 0.7 0.890002
Target:  5'- gGCGCGCGUUcgCgAGCGcGAGCGucagcuGCGg -3'
miRNA:   3'- gUGCGCGCAGuaG-UCGCuCUUGU------UGC- -5'
23748 3' -52.2 NC_005261.1 + 58211 0.7 0.890002
Target:  5'- gCGCGCGCGcCAgCAGCGcGcccGCGGCGg -3'
miRNA:   3'- -GUGCGCGCaGUaGUCGCuCu--UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 73494 0.7 0.890002
Target:  5'- gGCGCGCGgacgCGGCGAGGAUcccacuuaaGGCGu -3'
miRNA:   3'- gUGCGCGCaguaGUCGCUCUUG---------UUGC- -5'
23748 3' -52.2 NC_005261.1 + 94901 0.7 0.890002
Target:  5'- aCACGCGCGcgCuggaGGCGAGGaaggagcgcuucGCGACGg -3'
miRNA:   3'- -GUGCGCGCa-Guag-UCGCUCU------------UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 118661 0.7 0.882942
Target:  5'- cCGCGCGC-UCGg-GGCuGAGGGCGGCGg -3'
miRNA:   3'- -GUGCGCGcAGUagUCG-CUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 105141 0.7 0.882942
Target:  5'- gGCGCGCG-CAgguccucgCGGCucGAGGGCGGCGu -3'
miRNA:   3'- gUGCGCGCaGUa-------GUCG--CUCUUGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.