miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23748 3' -52.2 NC_005261.1 + 72 0.66 0.979961
Target:  5'- gGCGCGCG-CGggGGCGGGGu--GCGg -3'
miRNA:   3'- gUGCGCGCaGUagUCGCUCUuguUGC- -5'
23748 3' -52.2 NC_005261.1 + 1400 0.72 0.772185
Target:  5'- gGCGcCGCGgccgCGgcggCGGCGGGGGCGGCGc -3'
miRNA:   3'- gUGC-GCGCa---GUa---GUCGCUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 3426 0.67 0.969424
Target:  5'- aGCGCGCGggccagCGUCcaGGCGGGcGCG-CGg -3'
miRNA:   3'- gUGCGCGCa-----GUAG--UCGCUCuUGUuGC- -5'
23748 3' -52.2 NC_005261.1 + 3545 0.68 0.947018
Target:  5'- --gGCGCG-CAgcgCGGCGGGcGCGGCGc -3'
miRNA:   3'- gugCGCGCaGUa--GUCGCUCuUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 3880 0.73 0.742733
Target:  5'- gCACgGCGCG-CAgcUCGGCGAGcGCGGCGc -3'
miRNA:   3'- -GUG-CGCGCaGU--AGUCGCUCuUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 4440 0.68 0.942444
Target:  5'- --aGgGCGUCAgCAGCGGGcccuccAGCGGCGg -3'
miRNA:   3'- gugCgCGCAGUaGUCGCUC------UUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 4523 0.73 0.762487
Target:  5'- -cCGCGCGggcgCcgCGGCGAGGGCGcCGg -3'
miRNA:   3'- guGCGCGCa---GuaGUCGCUCUUGUuGC- -5'
23748 3' -52.2 NC_005261.1 + 5485 0.67 0.972365
Target:  5'- uCGCGCGCGcCGgggggUAGCuGGGGccgcgGCAGCGg -3'
miRNA:   3'- -GUGCGCGCaGUa----GUCG-CUCU-----UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 5987 0.7 0.871159
Target:  5'- -cCGCGCGUCuccgcuccucccgCGGCGAGGGCuccgGCGa -3'
miRNA:   3'- guGCGCGCAGua-----------GUCGCUCUUGu---UGC- -5'
23748 3' -52.2 NC_005261.1 + 6409 0.67 0.972365
Target:  5'- cCGCGCGCGUUGgcccggccugcUC-GCGAGGGCGGucCGg -3'
miRNA:   3'- -GUGCGCGCAGU-----------AGuCGCUCUUGUU--GC- -5'
23748 3' -52.2 NC_005261.1 + 7205 0.66 0.982109
Target:  5'- gCGCGUGCGUgG-CAGCGGuGAGUAGCu -3'
miRNA:   3'- -GUGCGCGCAgUaGUCGCU-CUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 10586 0.67 0.960746
Target:  5'- aAUGCGaCGUgagcggcagcgacucCAgCAGCGAGGACGACu -3'
miRNA:   3'- gUGCGC-GCA---------------GUaGUCGCUCUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 11295 0.66 0.979961
Target:  5'- -uCGCGCGUCGcaggggaGGUGGGGAgGAUGg -3'
miRNA:   3'- guGCGCGCAGUag-----UCGCUCUUgUUGC- -5'
23748 3' -52.2 NC_005261.1 + 11849 0.7 0.890002
Target:  5'- gGCGCGCGUUcgCgAGCGcGAGCGucagcuGCGg -3'
miRNA:   3'- gUGCGCGCAGuaG-UCGCuCUUGU------UGC- -5'
23748 3' -52.2 NC_005261.1 + 12964 0.73 0.742733
Target:  5'- gGCGCGCG-CAccccagaCAGCGAGGGCcGCGa -3'
miRNA:   3'- gUGCGCGCaGUa------GUCGCUCUUGuUGC- -5'
23748 3' -52.2 NC_005261.1 + 13070 0.69 0.903401
Target:  5'- cCGgGCGCGUCcgccggcccGUCGGCGG--GCGGCGg -3'
miRNA:   3'- -GUgCGCGCAG---------UAGUCGCUcuUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 13134 0.69 0.927222
Target:  5'- gGCGCGUGUgGUCGGUGAcGGCG-CGc -3'
miRNA:   3'- gUGCGCGCAgUAGUCGCUcUUGUuGC- -5'
23748 3' -52.2 NC_005261.1 + 13278 0.67 0.972365
Target:  5'- cCACGC-UGUUGUUGGCGGGGcgcagguguGCGACGg -3'
miRNA:   3'- -GUGCGcGCAGUAGUCGCUCU---------UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 14186 0.71 0.835847
Target:  5'- gGCGCGgGUCAggccCAGgGAGGAaGACGg -3'
miRNA:   3'- gUGCGCgCAGUa---GUCgCUCUUgUUGC- -5'
23748 3' -52.2 NC_005261.1 + 15696 0.68 0.951345
Target:  5'- aGCGCgaGCGUugCGUCGGCuGGGugGACGg -3'
miRNA:   3'- gUGCG--CGCA--GUAGUCGcUCUugUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.