miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23748 3' -52.2 NC_005261.1 + 17173 0.68 0.947018
Target:  5'- gCGCGgGCGUgggcagcccugCcgCGGCGGcGAGCAGCGc -3'
miRNA:   3'- -GUGCgCGCA-----------GuaGUCGCU-CUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 18838 0.66 0.977626
Target:  5'- uCGCGCucGUGUCcaCAGCGuGGAGCGugGa -3'
miRNA:   3'- -GUGCG--CGCAGuaGUCGC-UCUUGUugC- -5'
23748 3' -52.2 NC_005261.1 + 20836 0.69 0.921644
Target:  5'- -cUGCGCGU--UC-GCGGGGGCAGCGu -3'
miRNA:   3'- guGCGCGCAguAGuCGCUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 21695 0.66 0.975097
Target:  5'- --aGCGCGUCGcgGGCGAGcGCuucACGg -3'
miRNA:   3'- gugCGCGCAGUagUCGCUCuUGu--UGC- -5'
23748 3' -52.2 NC_005261.1 + 21764 0.66 0.979961
Target:  5'- aGCGCGCGcCG--GGCGAGccgccGCGGCGc -3'
miRNA:   3'- gUGCGCGCaGUagUCGCUCu----UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 27320 0.66 0.98408
Target:  5'- gCGCGCGgGUCAagGGgGcGGAACGGgGg -3'
miRNA:   3'- -GUGCGCgCAGUagUCgC-UCUUGUUgC- -5'
23748 3' -52.2 NC_005261.1 + 28241 0.7 0.882942
Target:  5'- gGCGCGCG-CGaUAGCGGGGGCuGCu -3'
miRNA:   3'- gUGCGCGCaGUaGUCGCUCUUGuUGc -5'
23748 3' -52.2 NC_005261.1 + 29337 0.7 0.882942
Target:  5'- cCGCGUGCGcuUCggCGGCGcGGGCGACa -3'
miRNA:   3'- -GUGCGCGC--AGuaGUCGCuCUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 31438 0.66 0.979961
Target:  5'- gCugGCgGCGcCGccCGGCGAGGACgAGCGc -3'
miRNA:   3'- -GugCG-CGCaGUa-GUCGCUCUUG-UUGC- -5'
23748 3' -52.2 NC_005261.1 + 32914 0.68 0.942444
Target:  5'- gGCGCGCGUgGggGGCGGcGGGCGGgGg -3'
miRNA:   3'- gUGCGCGCAgUagUCGCU-CUUGUUgC- -5'
23748 3' -52.2 NC_005261.1 + 33903 0.66 0.982109
Target:  5'- gGCGCGCGUauaaAGCG-GGGCcGCGu -3'
miRNA:   3'- gUGCGCGCAguagUCGCuCUUGuUGC- -5'
23748 3' -52.2 NC_005261.1 + 34234 0.69 0.921644
Target:  5'- gACGCGgcCGUCAUCuggGGCGaAGAcuACGACGc -3'
miRNA:   3'- gUGCGC--GCAGUAG---UCGC-UCU--UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 35516 0.7 0.868121
Target:  5'- gCugGCaGCGgCAUCGGCGGcAACAACa -3'
miRNA:   3'- -GugCG-CGCaGUAGUCGCUcUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 39232 0.69 0.921644
Target:  5'- uCGCGCGCGcCGgcgaggucucCGGCGAGGucucCAGCGa -3'
miRNA:   3'- -GUGCGCGCaGUa---------GUCGCUCUu---GUUGC- -5'
23748 3' -52.2 NC_005261.1 + 39352 0.72 0.781752
Target:  5'- uGCGCGCGgcggcagccgccUCAUCGGCGgccgGGGAgGGCGg -3'
miRNA:   3'- gUGCGCGC------------AGUAGUCGC----UCUUgUUGC- -5'
23748 3' -52.2 NC_005261.1 + 43592 0.72 0.772185
Target:  5'- uGCGCGaCGcCGUCuccGGCGAGGAgGGCGa -3'
miRNA:   3'- gUGCGC-GCaGUAG---UCGCUCUUgUUGC- -5'
23748 3' -52.2 NC_005261.1 + 43819 0.66 0.98408
Target:  5'- gGCGCGCccuccGUgGagaagcugcUCGGCGAGGGCGAgGa -3'
miRNA:   3'- gUGCGCG-----CAgU---------AGUCGCUCUUGUUgC- -5'
23748 3' -52.2 NC_005261.1 + 46833 0.7 0.868121
Target:  5'- gGCGCGCGUgcUCGGgaaCGAGGugGGCGu -3'
miRNA:   3'- gUGCGCGCAguAGUC---GCUCUugUUGC- -5'
23748 3' -52.2 NC_005261.1 + 47148 0.67 0.959274
Target:  5'- aGCGCcgGCGUCggCGGCcGAGAccacCAGCGg -3'
miRNA:   3'- gUGCG--CGCAGuaGUCG-CUCUu---GUUGC- -5'
23748 3' -52.2 NC_005261.1 + 47334 0.74 0.681342
Target:  5'- gGCGCGCG-CGUCGGCGAcGAcGCAGuCGa -3'
miRNA:   3'- gUGCGCGCaGUAGUCGCU-CU-UGUU-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.