miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23748 3' -52.2 NC_005261.1 + 49104 0.68 0.947018
Target:  5'- aGCGCGCG-CAgCAGCuccucGAGcGCGGCGg -3'
miRNA:   3'- gUGCGCGCaGUaGUCG-----CUCuUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 49268 0.67 0.972365
Target:  5'- gGCGCGCa-CGUCcGCGAGGAaGGCGc -3'
miRNA:   3'- gUGCGCGcaGUAGuCGCUCUUgUUGC- -5'
23748 3' -52.2 NC_005261.1 + 50573 0.67 0.972365
Target:  5'- aCGCGCcugGCGUCcgCcgcgAGCGGGGAgGGCa -3'
miRNA:   3'- -GUGCG---CGCAGuaG----UCGCUCUUgUUGc -5'
23748 3' -52.2 NC_005261.1 + 50997 0.72 0.809563
Target:  5'- gGCgGCGCGUgGgcgCGGCGGGAGCucGGCGa -3'
miRNA:   3'- gUG-CGCGCAgUa--GUCGCUCUUG--UUGC- -5'
23748 3' -52.2 NC_005261.1 + 52181 0.67 0.959274
Target:  5'- uGCGUGCGuUUAUUauGGCGAGccccGCGGCGg -3'
miRNA:   3'- gUGCGCGC-AGUAG--UCGCUCu---UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 52461 0.75 0.639425
Target:  5'- gGCGCGCGUCAggauGCGGuuGCGGCGg -3'
miRNA:   3'- gUGCGCGCAGUagu-CGCUcuUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 52596 0.66 0.98408
Target:  5'- aCAgGCGUGgcgAUCAGCagaacGGGGACGGCGc -3'
miRNA:   3'- -GUgCGCGCag-UAGUCG-----CUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 52969 0.66 0.974833
Target:  5'- cCGCGCcggugcgGCGcCGgcaGGCGGGGGCGGCGc -3'
miRNA:   3'- -GUGCG-------CGCaGUag-UCGCUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 54896 0.71 0.82727
Target:  5'- gCGCGCGCGUgCcgCAGCGcGcgUAGCGa -3'
miRNA:   3'- -GUGCGCGCA-GuaGUCGCuCuuGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 55208 0.66 0.979961
Target:  5'- --aGCGCGgauccggCGgcccgaggCGGCGAGGGCGGCa -3'
miRNA:   3'- gugCGCGCa------GUa-------GUCGCUCUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 57448 0.68 0.942444
Target:  5'- cCGCGCGaCGgCGUCcGCGaAGAGCAcGCGg -3'
miRNA:   3'- -GUGCGC-GCaGUAGuCGC-UCUUGU-UGC- -5'
23748 3' -52.2 NC_005261.1 + 58211 0.7 0.890002
Target:  5'- gCGCGCGCGcCAgCAGCGcGcccGCGGCGg -3'
miRNA:   3'- -GUGCGCGCaGUaGUCGCuCu--UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 59453 0.67 0.969424
Target:  5'- aGCaGCGCGgCcgCGGCGucggGGGGCAGCGc -3'
miRNA:   3'- gUG-CGCGCaGuaGUCGC----UCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 59572 0.73 0.742733
Target:  5'- gCGCGCGCG-CcgCAGCGGGuGCcGCGc -3'
miRNA:   3'- -GUGCGCGCaGuaGUCGCUCuUGuUGC- -5'
23748 3' -52.2 NC_005261.1 + 59772 0.67 0.966266
Target:  5'- cCAUGUGC-UCGgccgCAGCGAcGGCGGCGg -3'
miRNA:   3'- -GUGCGCGcAGUa---GUCGCUcUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 60045 0.66 0.979961
Target:  5'- gGCGC-CGaCGgcggCGGCGAaGAGCGGCGg -3'
miRNA:   3'- gUGCGcGCaGUa---GUCGCU-CUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 60240 0.66 0.975097
Target:  5'- gGC-CGCcuccgCcgCGGCGGGAGCGGCGg -3'
miRNA:   3'- gUGcGCGca---GuaGUCGCUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 62118 0.68 0.939581
Target:  5'- cCACGCcguccugcaggcccuGCGUCAgcagguuggggaUCAGCGAcAGCAGCa -3'
miRNA:   3'- -GUGCG---------------CGCAGU------------AGUCGCUcUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 63028 0.67 0.966266
Target:  5'- gGCGCcgGCGcCcgCGGCGAGGcggucgcgcaGCAGCGc -3'
miRNA:   3'- gUGCG--CGCaGuaGUCGCUCU----------UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 63792 0.73 0.742733
Target:  5'- gCGCGCGCGgcugCGUgAGCGuGAACccGACGc -3'
miRNA:   3'- -GUGCGCGCa---GUAgUCGCuCUUG--UUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.