miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23748 3' -52.2 NC_005261.1 + 63968 0.74 0.712362
Target:  5'- gCugGUGCGUCAgcgcCAGCGGGcuCAGCu -3'
miRNA:   3'- -GugCGCGCAGUa---GUCGCUCuuGUUGc -5'
23748 3' -52.2 NC_005261.1 + 64862 0.7 0.894124
Target:  5'- cCGCGuCGCGUCccagaucagcggCGGCGGGAGCGcCGg -3'
miRNA:   3'- -GUGC-GCGCAGua----------GUCGCUCUUGUuGC- -5'
23748 3' -52.2 NC_005261.1 + 66029 0.66 0.977626
Target:  5'- --gGCGCGUCguaGUCGGCGGccACGGCc -3'
miRNA:   3'- gugCGCGCAG---UAGUCGCUcuUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 66474 0.84 0.227876
Target:  5'- gGCGCGCGUCcucgcgGUaCAGCGAGAGCGGCa -3'
miRNA:   3'- gUGCGCGCAG------UA-GUCGCUCUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 67117 0.67 0.959274
Target:  5'- gGCGCGCG-CAgugCGGCGGcccGAccGCGGCGc -3'
miRNA:   3'- gUGCGCGCaGUa--GUCGCU---CU--UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 67306 0.67 0.969118
Target:  5'- gCGCGCGCcgccGUCGgccgccgccgcgcUCAGCcgcaGGAACAGCGc -3'
miRNA:   3'- -GUGCGCG----CAGU-------------AGUCGc---UCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 67398 0.68 0.947018
Target:  5'- cCGCGCGCGcCAggacCAGCGccgccAGCAGCGc -3'
miRNA:   3'- -GUGCGCGCaGUa---GUCGCuc---UUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 68684 0.66 0.979961
Target:  5'- cCGC-CGCGUgGgggcCGGCGcGGACGACGg -3'
miRNA:   3'- -GUGcGCGCAgUa---GUCGCuCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 69298 0.67 0.966266
Target:  5'- gGCGCgggGCGcCGguggCGGCGGGAGCGGgGg -3'
miRNA:   3'- gUGCG---CGCaGUa---GUCGCUCUUGUUgC- -5'
23748 3' -52.2 NC_005261.1 + 69420 0.66 0.977626
Target:  5'- aCACGCGcCGgcgCAUCAcgGAGAcggGCAGCGc -3'
miRNA:   3'- -GUGCGC-GCa--GUAGUcgCUCU---UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 70486 0.66 0.980842
Target:  5'- gCGCGCGCGUgAgcacguagcuggcguUCGGCGccacgGGGACGAUc -3'
miRNA:   3'- -GUGCGCGCAgU---------------AGUCGC-----UCUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 71345 0.67 0.962885
Target:  5'- --aGCGCGUCcUCGGUGAGcgccGAgAGCGc -3'
miRNA:   3'- gugCGCGCAGuAGUCGCUC----UUgUUGC- -5'
23748 3' -52.2 NC_005261.1 + 71504 0.7 0.896823
Target:  5'- uGCGCGCGaaaGUCGGCGGGcucguccgcguACGACGc -3'
miRNA:   3'- gUGCGCGCag-UAGUCGCUCu----------UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 71945 0.67 0.966266
Target:  5'- cCGCGCGCcccacuggCGUCGGCGcGGGGCG-CGg -3'
miRNA:   3'- -GUGCGCGca------GUAGUCGC-UCUUGUuGC- -5'
23748 3' -52.2 NC_005261.1 + 72203 0.67 0.969424
Target:  5'- cCGCGCGCGg---CAGaaAGAACAugGu -3'
miRNA:   3'- -GUGCGCGCaguaGUCgcUCUUGUugC- -5'
23748 3' -52.2 NC_005261.1 + 72448 0.68 0.955429
Target:  5'- gCGgGgGCGcCcgCGGCGAGcGCGGCGa -3'
miRNA:   3'- -GUgCgCGCaGuaGUCGCUCuUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 73494 0.7 0.890002
Target:  5'- gGCGCGCGgacgCGGCGAGGAUcccacuuaaGGCGu -3'
miRNA:   3'- gUGCGCGCaguaGUCGCUCUUG---------UUGC- -5'
23748 3' -52.2 NC_005261.1 + 74271 0.82 0.298252
Target:  5'- gCGCGCGCGUCcgCGGCGGGcGgGGCGg -3'
miRNA:   3'- -GUGCGCGCAGuaGUCGCUCuUgUUGC- -5'
23748 3' -52.2 NC_005261.1 + 75069 0.7 0.882942
Target:  5'- cCGCGCGCGc---CGGCGGGGGCucGGCGg -3'
miRNA:   3'- -GUGCGCGCaguaGUCGCUCUUG--UUGC- -5'
23748 3' -52.2 NC_005261.1 + 75326 0.71 0.849974
Target:  5'- gGCGCGCGgagcccugugaccuUCGUCGGCcucguGGAGCAGCu -3'
miRNA:   3'- gUGCGCGC--------------AGUAGUCGc----UCUUGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.