miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23748 3' -52.2 NC_005261.1 + 137755 0.66 0.979961
Target:  5'- gGCGCGCG-CGggGGCGGGGu--GCGg -3'
miRNA:   3'- gUGCGCGCaGUagUCGCUCUuguUGC- -5'
23748 3' -52.2 NC_005261.1 + 136617 0.71 0.860372
Target:  5'- gGCGCGCG-CG-CGcCGAGGGCGGCGg -3'
miRNA:   3'- gUGCGCGCaGUaGUcGCUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 136478 0.72 0.791177
Target:  5'- uCGCGCGCGggCAgCAGCGAGcagcuCGGCGc -3'
miRNA:   3'- -GUGCGCGCa-GUaGUCGCUCuu---GUUGC- -5'
23748 3' -52.2 NC_005261.1 + 136060 0.66 0.979961
Target:  5'- gGCGgGCGgg--CAGgGAGAACAaagGCGa -3'
miRNA:   3'- gUGCgCGCaguaGUCgCUCUUGU---UGC- -5'
23748 3' -52.2 NC_005261.1 + 135257 0.72 0.800451
Target:  5'- gGCGCGCGgauggaCAUCAuGCGgccugugcAGAACGGCGg -3'
miRNA:   3'- gUGCGCGCa-----GUAGU-CGC--------UCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 134789 0.74 0.670904
Target:  5'- --aGCGCGacccUCAgcucggcCAGCGAGAGCGACGa -3'
miRNA:   3'- gugCGCGC----AGUa------GUCGCUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 134210 0.71 0.860372
Target:  5'- gCGCGCGgGUCG-CGGCGGccgGCAGCGu -3'
miRNA:   3'- -GUGCGCgCAGUaGUCGCUcu-UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 134075 0.67 0.962885
Target:  5'- -uCGCGCGgcUCAUguGCGAGcucuCGGCGc -3'
miRNA:   3'- guGCGCGC--AGUAguCGCUCuu--GUUGC- -5'
23748 3' -52.2 NC_005261.1 + 133718 0.67 0.966266
Target:  5'- gGCGCcgucuaCGUCGgggCGGCGcGGACAACGc -3'
miRNA:   3'- gUGCGc-----GCAGUa--GUCGCuCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 133058 0.68 0.942444
Target:  5'- uGCGCgGCGUUggCGGCGAGuacguCAGCu -3'
miRNA:   3'- gUGCG-CGCAGuaGUCGCUCuu---GUUGc -5'
23748 3' -52.2 NC_005261.1 + 131618 0.66 0.982109
Target:  5'- gUACGCGCGcCuggCGcccgccGCGAGGAcCGACGg -3'
miRNA:   3'- -GUGCGCGCaGua-GU------CGCUCUU-GUUGC- -5'
23748 3' -52.2 NC_005261.1 + 130482 0.71 0.844228
Target:  5'- gGCGUGCcUCggCGGCGAGGGCcccGACGa -3'
miRNA:   3'- gUGCGCGcAGuaGUCGCUCUUG---UUGC- -5'
23748 3' -52.2 NC_005261.1 + 127659 0.72 0.781752
Target:  5'- gGCGCGCGgguUCggGGCGGGAcgGCGGCGg -3'
miRNA:   3'- gUGCGCGCaguAG--UCGCUCU--UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 126784 0.69 0.903401
Target:  5'- cUAC-CGCGUCugcGUCuGcCGAGAGCAGCGc -3'
miRNA:   3'- -GUGcGCGCAG---UAGuC-GCUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 122650 0.73 0.742733
Target:  5'- gGCGCGCGUaCGUgGGCGcgaAGAGCAucACGu -3'
miRNA:   3'- gUGCGCGCA-GUAgUCGC---UCUUGU--UGC- -5'
23748 3' -52.2 NC_005261.1 + 120289 0.71 0.835847
Target:  5'- aGCuGCGCGUguUCuuCGAGGGCGGCGa -3'
miRNA:   3'- gUG-CGCGCAguAGucGCUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 118698 0.68 0.948778
Target:  5'- aCGCGCgGCGUgGUCcugcucagcgucgcgGGCGGGcACGGCGu -3'
miRNA:   3'- -GUGCG-CGCAgUAG---------------UCGCUCuUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 118661 0.7 0.882942
Target:  5'- cCGCGCGC-UCGg-GGCuGAGGGCGGCGg -3'
miRNA:   3'- -GUGCGCGcAGUagUCG-CUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 116549 0.78 0.475653
Target:  5'- cCGCGCGCGUCAUacaagggaaAGCGGaGGCGACGa -3'
miRNA:   3'- -GUGCGCGCAGUAg--------UCGCUcUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 115274 0.66 0.98408
Target:  5'- -cCGCGCGUCugggacGCGGGcAGCAGCc -3'
miRNA:   3'- guGCGCGCAGuagu--CGCUC-UUGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.