miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23748 3' -52.2 NC_005261.1 + 112918 0.77 0.545537
Target:  5'- uGCGUGCG-CGagGGCGAGGGCGGCGc -3'
miRNA:   3'- gUGCGCGCaGUagUCGCUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 112068 0.76 0.60789
Target:  5'- gGCGUGCccUCGUCGGCGAGGGCGccACGu -3'
miRNA:   3'- gUGCGCGc-AGUAGUCGCUCUUGU--UGC- -5'
23748 3' -52.2 NC_005261.1 + 109842 0.67 0.969424
Target:  5'- uCugGCGUGcCGUUGGUggcggcuccuGGGGGCAGCGg -3'
miRNA:   3'- -GugCGCGCaGUAGUCG----------CUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 108453 0.82 0.312726
Target:  5'- aGCaGCGCGUCGUCGGCGAGGAUcuccGCGu -3'
miRNA:   3'- gUG-CGCGCAGUAGUCGCUCUUGu---UGC- -5'
23748 3' -52.2 NC_005261.1 + 108179 0.67 0.962885
Target:  5'- gGCGCGCGgCcgCGgcuccgggcGCGAGAGCuGCGc -3'
miRNA:   3'- gUGCGCGCaGuaGU---------CGCUCUUGuUGC- -5'
23748 3' -52.2 NC_005261.1 + 107530 0.67 0.972081
Target:  5'- gGCaGCGCGUCggCGGCcaccagcacguccGAGAgcacgGCAGCGg -3'
miRNA:   3'- gUG-CGCGCAGuaGUCG-------------CUCU-----UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 105950 0.66 0.979961
Target:  5'- aGCGCGcCGUCGauggccUCGGCGcccAGcGCGGCGu -3'
miRNA:   3'- gUGCGC-GCAGU------AGUCGC---UCuUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 105260 0.71 0.835847
Target:  5'- -cCGCGCGaCAggcUCGGCGGGcGGCAGCGc -3'
miRNA:   3'- guGCGCGCaGU---AGUCGCUC-UUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 105141 0.7 0.882942
Target:  5'- gGCGCGCG-CAgguccucgCGGCucGAGGGCGGCGu -3'
miRNA:   3'- gUGCGCGCaGUa-------GUCG--CUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 104329 0.76 0.575486
Target:  5'- aCGCGCGCGUCcagcggccggccGUCGcgcagcgccgcccGCGAGAACAGCc -3'
miRNA:   3'- -GUGCGCGCAG------------UAGU-------------CGCUCUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 104182 0.79 0.419482
Target:  5'- gCGCGCGgGUCGUCgGGCG-GGACGGCGu -3'
miRNA:   3'- -GUGCGCgCAGUAG-UCGCuCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 104074 0.72 0.791177
Target:  5'- --aGCGCGUCcagcUCGGCGgacAGGGCGGCGg -3'
miRNA:   3'- gugCGCGCAGu---AGUCGC---UCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 103853 0.7 0.882942
Target:  5'- uGCGCGCGagCcgCGGCGgcggcGGGGCGGCGc -3'
miRNA:   3'- gUGCGCGCa-GuaGUCGC-----UCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 103488 0.75 0.649935
Target:  5'- gCugGCGCaagacGUCGUCGGCGccgcGGACGGCGg -3'
miRNA:   3'- -GugCGCG-----CAGUAGUCGCu---CUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 101304 0.72 0.818506
Target:  5'- gAUGCGCGcCGUUAGCGGGuGCGAg- -3'
miRNA:   3'- gUGCGCGCaGUAGUCGCUCuUGUUgc -5'
23748 3' -52.2 NC_005261.1 + 101223 0.66 0.982109
Target:  5'- cCGCaGCGCGUCGagguggcgccUCAGCucGcGCAGCGc -3'
miRNA:   3'- -GUG-CGCGCAGU----------AGUCGcuCuUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 100735 0.66 0.979961
Target:  5'- gCGCGCGCG-CG-CGGCGGcGcGCGGCa -3'
miRNA:   3'- -GUGCGCGCaGUaGUCGCU-CuUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 100663 0.7 0.868121
Target:  5'- gGCGCGCGUCGcgggguUCGcgcGCGAGuGCAccGCGg -3'
miRNA:   3'- gUGCGCGCAGU------AGU---CGCUCuUGU--UGC- -5'
23748 3' -52.2 NC_005261.1 + 98900 0.75 0.649935
Target:  5'- gACGCGCGUgAaCAGCGGGu-CGGCGg -3'
miRNA:   3'- gUGCGCGCAgUaGUCGCUCuuGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 98293 0.66 0.982109
Target:  5'- --gGCGCGUCcgCGGCcucGGGGGCGgGCGc -3'
miRNA:   3'- gugCGCGCAGuaGUCG---CUCUUGU-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.