miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23748 3' -52.2 NC_005261.1 + 96946 0.76 0.60789
Target:  5'- cCACGgGCG-CAUCGGCG-GGGCAGCc -3'
miRNA:   3'- -GUGCgCGCaGUAGUCGCuCUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 94901 0.7 0.890002
Target:  5'- aCACGCGCGcgCuggaGGCGAGGaaggagcgcuucGCGACGg -3'
miRNA:   3'- -GUGCGCGCa-Guag-UCGCUCU------------UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 94633 0.72 0.800451
Target:  5'- gGCGC-CGUCGUCGGCGcgcgcGAACAuGCGg -3'
miRNA:   3'- gUGCGcGCAGUAGUCGCu----CUUGU-UGC- -5'
23748 3' -52.2 NC_005261.1 + 93764 0.66 0.977626
Target:  5'- cCGCGCGCG-CG-CGGCGuc-GCAGCa -3'
miRNA:   3'- -GUGCGCGCaGUaGUCGCucuUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 93720 0.68 0.951345
Target:  5'- -uCGU-CGUCGUCGGCGGcGGCAGCGc -3'
miRNA:   3'- guGCGcGCAGUAGUCGCUcUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 93541 0.66 0.977626
Target:  5'- cCGCGCGCGcCGcccagUAGCGGucGACGGCGg -3'
miRNA:   3'- -GUGCGCGCaGUa----GUCGCUc-UUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 93481 0.74 0.6803
Target:  5'- gGCGCGCGUCGcccgCGGCGAagcgcgcGAACcGCGg -3'
miRNA:   3'- gUGCGCGCAGUa---GUCGCU-------CUUGuUGC- -5'
23748 3' -52.2 NC_005261.1 + 93360 0.68 0.937621
Target:  5'- aGCGCGCGcCAgugcgcCGGCGuGAGCAGg- -3'
miRNA:   3'- gUGCGCGCaGUa-----GUCGCuCUUGUUgc -5'
23748 3' -52.2 NC_005261.1 + 93108 0.76 0.565109
Target:  5'- uCGCGCGCGUCGUCGcCGGaaaaugcGAACAGCa -3'
miRNA:   3'- -GUGCGCGCAGUAGUcGCU-------CUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 92458 0.71 0.82466
Target:  5'- cCACGgGCGUCGUCcggaugAGCGGcaccgcgagcucgcGGACGGCGg -3'
miRNA:   3'- -GUGCgCGCAGUAG------UCGCU--------------CUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 92085 0.68 0.948778
Target:  5'- aCACGCGCGUCgcgcacgcccccGUCccgcagcacgugguaGGCGAaGAAUAGCu -3'
miRNA:   3'- -GUGCGCGCAG------------UAG---------------UCGCU-CUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 91393 0.7 0.896823
Target:  5'- cUACGUGauCGUCGcgccCGGCGAGGACGugGa -3'
miRNA:   3'- -GUGCGC--GCAGUa---GUCGCUCUUGUugC- -5'
23748 3' -52.2 NC_005261.1 + 90120 0.68 0.932548
Target:  5'- gACGCG-GcCcgCGGCGAGGGCGAgGa -3'
miRNA:   3'- gUGCGCgCaGuaGUCGCUCUUGUUgC- -5'
23748 3' -52.2 NC_005261.1 + 89855 0.77 0.525175
Target:  5'- cCGCG-GCGUCAUCGGCGAGuACuGCa -3'
miRNA:   3'- -GUGCgCGCAGUAGUCGCUCuUGuUGc -5'
23748 3' -52.2 NC_005261.1 + 89111 0.67 0.959274
Target:  5'- gCGCGCGCGUgGcacugCGcGCGccGGAGCAGCa -3'
miRNA:   3'- -GUGCGCGCAgUa----GU-CGC--UCUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 88383 0.69 0.921072
Target:  5'- aGCGCGCGcccaagguguaccUCGaCGGCGAGGagcACGACa -3'
miRNA:   3'- gUGCGCGC-------------AGUaGUCGCUCU---UGUUGc -5'
23748 3' -52.2 NC_005261.1 + 87474 0.69 0.921644
Target:  5'- gGCGCGCGUCAgguUCGGCGcGGccguGCuGGCGc -3'
miRNA:   3'- gUGCGCGCAGU---AGUCGCuCU----UG-UUGC- -5'
23748 3' -52.2 NC_005261.1 + 86266 0.74 0.702081
Target:  5'- gCACGCGUgccgGUCGUCGcGCGAGcACAGCc -3'
miRNA:   3'- -GUGCGCG----CAGUAGU-CGCUCuUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 86092 0.66 0.977626
Target:  5'- -cCGCGCGuucUCGUCGGCGcccGGGCGuCGg -3'
miRNA:   3'- guGCGCGC---AGUAGUCGCu--CUUGUuGC- -5'
23748 3' -52.2 NC_005261.1 + 84699 0.66 0.98408
Target:  5'- gGCGCGCGgg--CAcGCGAGcACAaaGCGg -3'
miRNA:   3'- gUGCGCGCaguaGU-CGCUCuUGU--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.