Results 41 - 60 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 89855 | 0.77 | 0.525175 |
Target: 5'- cCGCG-GCGUCAUCGGCGAGuACuGCa -3' miRNA: 3'- -GUGCgCGCAGUAGUCGCUCuUGuUGc -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 116549 | 0.78 | 0.475653 |
Target: 5'- cCGCGCGCGUCAUacaagggaaAGCGGaGGCGACGa -3' miRNA: 3'- -GUGCGCGCAGUAg--------UCGCUcUUGUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 104182 | 0.79 | 0.419482 |
Target: 5'- gCGCGCGgGUCGUCgGGCG-GGACGGCGu -3' miRNA: 3'- -GUGCGCgCAGUAG-UCGCuCUUGUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 108453 | 0.82 | 0.312726 |
Target: 5'- aGCaGCGCGUCGUCGGCGAGGAUcuccGCGu -3' miRNA: 3'- gUG-CGCGCAGUAGUCGCUCUUGu---UGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 74271 | 0.82 | 0.298252 |
Target: 5'- gCGCGCGCGUCcgCGGCGGGcGgGGCGg -3' miRNA: 3'- -GUGCGCGCAGuaGUCGCUCuUgUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 103488 | 0.75 | 0.649935 |
Target: 5'- gCugGCGCaagacGUCGUCGGCGccgcGGACGGCGg -3' miRNA: 3'- -GugCGCG-----CAGUAGUCGCu---CUUGUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 75391 | 0.74 | 0.670904 |
Target: 5'- gGCGCGCGcCAUCGaCGAGGGCG-CGg -3' miRNA: 3'- gUGCGCGCaGUAGUcGCUCUUGUuGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 43592 | 0.72 | 0.772185 |
Target: 5'- uGCGCGaCGcCGUCuccGGCGAGGAgGGCGa -3' miRNA: 3'- gUGCGC-GCaGUAG---UCGCUCUUgUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 1400 | 0.72 | 0.772185 |
Target: 5'- gGCGcCGCGgccgCGgcggCGGCGGGGGCGGCGc -3' miRNA: 3'- gUGC-GCGCa---GUa---GUCGCUCUUGUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 4523 | 0.73 | 0.762487 |
Target: 5'- -cCGCGCGggcgCcgCGGCGAGGGCGcCGg -3' miRNA: 3'- guGCGCGCa---GuaGUCGCUCUUGUuGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 122650 | 0.73 | 0.742733 |
Target: 5'- gGCGCGCGUaCGUgGGCGcgaAGAGCAucACGu -3' miRNA: 3'- gUGCGCGCA-GUAgUCGC---UCUUGU--UGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 63792 | 0.73 | 0.742733 |
Target: 5'- gCGCGCGCGgcugCGUgAGCGuGAACccGACGc -3' miRNA: 3'- -GUGCGCGCa---GUAgUCGCuCUUG--UUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 59572 | 0.73 | 0.742733 |
Target: 5'- gCGCGCGCG-CcgCAGCGGGuGCcGCGc -3' miRNA: 3'- -GUGCGCGCaGuaGUCGCUCuUGuUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 12964 | 0.73 | 0.742733 |
Target: 5'- gGCGCGCG-CAccccagaCAGCGAGGGCcGCGa -3' miRNA: 3'- gUGCGCGCaGUa------GUCGCUCUUGuUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 3880 | 0.73 | 0.742733 |
Target: 5'- gCACgGCGCG-CAgcUCGGCGAGcGCGGCGc -3' miRNA: 3'- -GUG-CGCGCaGU--AGUCGCUCuUGUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 63968 | 0.74 | 0.712362 |
Target: 5'- gCugGUGCGUCAgcgcCAGCGGGcuCAGCu -3' miRNA: 3'- -GugCGCGCAGUa---GUCGCUCuuGUUGc -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 86266 | 0.74 | 0.702081 |
Target: 5'- gCACGCGUgccgGUCGUCGcGCGAGcACAGCc -3' miRNA: 3'- -GUGCGCG----CAGUAGU-CGCUCuUGUUGc -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 47334 | 0.74 | 0.681342 |
Target: 5'- gGCGCGCG-CGUCGGCGAcGAcGCAGuCGa -3' miRNA: 3'- gUGCGCGCaGUAGUCGCU-CU-UGUU-GC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 93481 | 0.74 | 0.6803 |
Target: 5'- gGCGCGCGUCGcccgCGGCGAagcgcgcGAACcGCGg -3' miRNA: 3'- gUGCGCGCAGUa---GUCGCU-------CUUGuUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 134789 | 0.74 | 0.670904 |
Target: 5'- --aGCGCGacccUCAgcucggcCAGCGAGAGCGACGa -3' miRNA: 3'- gugCGCGC----AGUa------GUCGCUCUUGUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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