Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23749 | 3' | -54.7 | NC_005261.1 | + | 171 | 0.67 | 0.874536 |
Target: 5'- gGCGGGGcuGGcGCCCCUGGugcucccGGGGCcaGCg -3' miRNA: 3'- gCGCUCU--UCaUGGGGACCu------UCUCG--UG- -5' |
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23749 | 3' | -54.7 | NC_005261.1 | + | 423 | 0.67 | 0.874536 |
Target: 5'- cCGCGAcGggGUGCCCaCggaccgGGAcGGGgACg -3' miRNA: 3'- -GCGCU-CuuCAUGGG-Ga-----CCUuCUCgUG- -5' |
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23749 | 3' | -54.7 | NC_005261.1 | + | 1066 | 0.7 | 0.76203 |
Target: 5'- gCGCGGGggGcugGCCCCgcuccaGGgcGAGCcCg -3' miRNA: 3'- -GCGCUCuuCa--UGGGGa-----CCuuCUCGuG- -5' |
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23749 | 3' | -54.7 | NC_005261.1 | + | 12727 | 0.66 | 0.926057 |
Target: 5'- gCGCGGGcccgccGgcCCCCUGGgcGGGCcCg -3' miRNA: 3'- -GCGCUCuu----CauGGGGACCuuCUCGuG- -5' |
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23749 | 3' | -54.7 | NC_005261.1 | + | 13651 | 0.7 | 0.732466 |
Target: 5'- gCGCGcGccGUGCCgCCgccgcgGGggGGGCGCg -3' miRNA: 3'- -GCGCuCuuCAUGG-GGa-----CCuuCUCGUG- -5' |
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23749 | 3' | -54.7 | NC_005261.1 | + | 23481 | 0.68 | 0.862432 |
Target: 5'- gGCGAGugcgcGGgcCCgCCUGGGcaggcgcgggcccugGGAGCACg -3' miRNA: 3'- gCGCUCu----UCauGG-GGACCU---------------UCUCGUG- -5' |
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23749 | 3' | -54.7 | NC_005261.1 | + | 24032 | 0.67 | 0.902228 |
Target: 5'- gCGCGGGGuucgGGUGggcgUCCUUGGguGGGCGCc -3' miRNA: 3'- -GCGCUCU----UCAU----GGGGACCuuCUCGUG- -5' |
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23749 | 3' | -54.7 | NC_005261.1 | + | 25311 | 0.66 | 0.92047 |
Target: 5'- uCGuCGGGggGUucgaaucccaGCCCCggcuUGGggGGGCc- -3' miRNA: 3'- -GC-GCUCuuCA----------UGGGG----ACCuuCUCGug -5' |
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23749 | 3' | -54.7 | NC_005261.1 | + | 25992 | 0.7 | 0.771659 |
Target: 5'- aCGaUGAGggGUgggGCCCCgGGAgagagAGAGCAa -3' miRNA: 3'- -GC-GCUCuuCA---UGGGGaCCU-----UCUCGUg -5' |
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23749 | 3' | -54.7 | NC_005261.1 | + | 29114 | 0.69 | 0.808784 |
Target: 5'- aCGcCGAGggG-AgCCCUGGcgccgGGGGGCGCc -3' miRNA: 3'- -GC-GCUCuuCaUgGGGACC-----UUCUCGUG- -5' |
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23749 | 3' | -54.7 | NC_005261.1 | + | 30426 | 0.67 | 0.895659 |
Target: 5'- cCGCGGGcGGa---CCUGGAGGAGgACg -3' miRNA: 3'- -GCGCUCuUCauggGGACCUUCUCgUG- -5' |
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23749 | 3' | -54.7 | NC_005261.1 | + | 32781 | 0.71 | 0.712288 |
Target: 5'- --gGAGAGGgagGCCCggCUGGggGGGCAa -3' miRNA: 3'- gcgCUCUUCa--UGGG--GACCuuCUCGUg -5' |
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23749 | 3' | -54.7 | NC_005261.1 | + | 41414 | 0.67 | 0.895659 |
Target: 5'- gCGCGccacGAcgAGU-CCCUUGGccGAGCACa -3' miRNA: 3'- -GCGCu---CU--UCAuGGGGACCuuCUCGUG- -5' |
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23749 | 3' | -54.7 | NC_005261.1 | + | 46064 | 0.68 | 0.842425 |
Target: 5'- aGCGGGAAGggcGCCgCCUcguggccGGAcacGAGCACg -3' miRNA: 3'- gCGCUCUUCa--UGG-GGA-------CCUu--CUCGUG- -5' |
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23749 | 3' | -54.7 | NC_005261.1 | + | 47600 | 0.66 | 0.92047 |
Target: 5'- gCGCGAgGGAGccgcCCCCUGcGGGGGCGg -3' miRNA: 3'- -GCGCU-CUUCau--GGGGACcUUCUCGUg -5' |
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23749 | 3' | -54.7 | NC_005261.1 | + | 49799 | 0.66 | 0.908554 |
Target: 5'- gCGCGAGAcGUcGCCCUccGcGGGGCGCg -3' miRNA: 3'- -GCGCUCUuCA-UGGGGacCuUCUCGUG- -5' |
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23749 | 3' | -54.7 | NC_005261.1 | + | 54170 | 0.7 | 0.76203 |
Target: 5'- uGcCGGGAAG-ACCaaggGGAGGAGCGCg -3' miRNA: 3'- gC-GCUCUUCaUGGgga-CCUUCUCGUG- -5' |
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23749 | 3' | -54.7 | NC_005261.1 | + | 55257 | 0.76 | 0.430526 |
Target: 5'- cCGCGAGGAGgucugcgcCCCCUGGcgcgccggaggcGGGGGCGCu -3' miRNA: 3'- -GCGCUCUUCau------GGGGACC------------UUCUCGUG- -5' |
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23749 | 3' | -54.7 | NC_005261.1 | + | 56049 | 0.7 | 0.771659 |
Target: 5'- gCGCGAGcgauguucGGGgGCgCCCUGGgcGAGCAg -3' miRNA: 3'- -GCGCUC--------UUCaUG-GGGACCuuCUCGUg -5' |
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23749 | 3' | -54.7 | NC_005261.1 | + | 57591 | 0.69 | 0.817671 |
Target: 5'- gCGCGucGAuGUGCCaCCUGGcGGcGCACg -3' miRNA: 3'- -GCGCu-CUuCAUGG-GGACCuUCuCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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