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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2375 | 3' | -51.8 | NC_001416.1 | + | 16184 | 0.67 | 0.797244 |
Target: 5'- uGCCGUGUUCggguAGCaCUGUUucacaucgaugaUUUCAGUGu -3' miRNA: 3'- -UGGCACGAG----UCG-GACAA------------AAAGUCGCu -5' |
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2375 | 3' | -51.8 | NC_001416.1 | + | 10281 | 1.09 | 0.001685 |
Target: 5'- cACCGUGCUCAGCCUGUUUUUCAGCGAu -3' miRNA: 3'- -UGGCACGAGUCGGACAAAAAGUCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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