miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23750 3' -54.2 NC_005261.1 + 62022 0.66 0.962916
Target:  5'- aGCGCCGucugcCGUCCUCccgcggcucGGCCGG--CUCCa -3'
miRNA:   3'- -CGCGGU-----GCAGGAGc--------UUGGUCuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 4311 0.66 0.962916
Target:  5'- cCGCCGCGUagcgcgcggccgCCUCG---CGGAUCUCg -3'
miRNA:   3'- cGCGGUGCA------------GGAGCuugGUCUAGAGg -5'
23750 3' -54.2 NC_005261.1 + 4960 0.66 0.962916
Target:  5'- gGCGCCcccggccgcgGCGUCCUCugGGGcCCGGAgggCgCCg -3'
miRNA:   3'- -CGCGG----------UGCAGGAG--CUU-GGUCUa--GaGG- -5'
23750 3' -54.2 NC_005261.1 + 120601 0.66 0.962916
Target:  5'- uCGCCuGCGgCCUCGGcGCCguGGggCUCCu -3'
miRNA:   3'- cGCGG-UGCaGGAGCU-UGG--UCuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 75667 0.66 0.962916
Target:  5'- gGCGCgCGCGcagaaccucuUCCUCGccgagGACCAGAg--CCu -3'
miRNA:   3'- -CGCG-GUGC----------AGGAGC-----UUGGUCUagaGG- -5'
23750 3' -54.2 NC_005261.1 + 81299 0.66 0.962916
Target:  5'- gGCGCgCACGUCCgugcCGuuguCgGGGUCgucgCCg -3'
miRNA:   3'- -CGCG-GUGCAGGa---GCuu--GgUCUAGa---GG- -5'
23750 3' -54.2 NC_005261.1 + 126536 0.66 0.962916
Target:  5'- cCGCCGCG-CCUCG-GCCAcGcgCcgCCg -3'
miRNA:   3'- cGCGGUGCaGGAGCuUGGU-CuaGa-GG- -5'
23750 3' -54.2 NC_005261.1 + 3342 0.66 0.959391
Target:  5'- cGCGCCGCGgcgCC-CGGcgcGCCGGc-CUUCa -3'
miRNA:   3'- -CGCGGUGCa--GGaGCU---UGGUCuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 100081 0.66 0.959391
Target:  5'- cGCGCCGCGccCCUCGccGCCGccgCUgCCg -3'
miRNA:   3'- -CGCGGUGCa-GGAGCu-UGGUcuaGA-GG- -5'
23750 3' -54.2 NC_005261.1 + 101364 0.66 0.959391
Target:  5'- cGCgGCCACGUCCa-GcuCCGGcgcCUCCu -3'
miRNA:   3'- -CG-CGGUGCAGGagCuuGGUCua-GAGG- -5'
23750 3' -54.2 NC_005261.1 + 24541 0.66 0.959391
Target:  5'- cGC-CCACGUaCCUggcCGGgcggcGCCAGGUC-CCa -3'
miRNA:   3'- -CGcGGUGCA-GGA---GCU-----UGGUCUAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 72974 0.66 0.959391
Target:  5'- cCGCCGCGggggUCCgCGAgcgcgGCCAGcgCgUCCg -3'
miRNA:   3'- cGCGGUGC----AGGaGCU-----UGGUCuaG-AGG- -5'
23750 3' -54.2 NC_005261.1 + 123464 0.66 0.959391
Target:  5'- cCGUCGCGggCCUC---CCAGAaCUCCa -3'
miRNA:   3'- cGCGGUGCa-GGAGcuuGGUCUaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 50574 0.66 0.959391
Target:  5'- cGCGCCugGCGUCCgccgCGAGCgGGGa---- -3'
miRNA:   3'- -CGCGG--UGCAGGa---GCUUGgUCUagagg -5'
23750 3' -54.2 NC_005261.1 + 104266 0.66 0.959391
Target:  5'- aGCGCCGCGgUCUCGGcggcuGCgCGGGcCUCg -3'
miRNA:   3'- -CGCGGUGCaGGAGCU-----UG-GUCUaGAGg -5'
23750 3' -54.2 NC_005261.1 + 54268 0.66 0.959027
Target:  5'- gGCGCCGCGcacacuggaCCUCGGgcguuucgcgggcGCCGGuuaacaccagCUCCa -3'
miRNA:   3'- -CGCGGUGCa--------GGAGCU-------------UGGUCua--------GAGG- -5'
23750 3' -54.2 NC_005261.1 + 32331 0.66 0.955643
Target:  5'- gGCGCCcgGCGUggCCUgggacgCGGACCAGggC-CCg -3'
miRNA:   3'- -CGCGG--UGCA--GGA------GCUUGGUCuaGaGG- -5'
23750 3' -54.2 NC_005261.1 + 92575 0.66 0.955643
Target:  5'- cGCGCCGCGcgCCcacgcgCGAGCgCAGccgCUCg -3'
miRNA:   3'- -CGCGGUGCa-GGa-----GCUUG-GUCua-GAGg -5'
23750 3' -54.2 NC_005261.1 + 16632 0.66 0.955643
Target:  5'- cGCGCCGag-CUUCGAgaACCAGcaGUCcCCg -3'
miRNA:   3'- -CGCGGUgcaGGAGCU--UGGUC--UAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 106591 0.66 0.955643
Target:  5'- cGCGCgGCGcUCCUCcuGGACCucGUC-CCa -3'
miRNA:   3'- -CGCGgUGC-AGGAG--CUUGGucUAGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.