miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23750 3' -54.2 NC_005261.1 + 103461 0.66 0.951667
Target:  5'- cCGCCGCG-CC-CGucGCCAGggCgUCCa -3'
miRNA:   3'- cGCGGUGCaGGaGCu-UGGUCuaG-AGG- -5'
23750 3' -54.2 NC_005261.1 + 100602 0.66 0.943016
Target:  5'- cCGCCACGcggCCgcgcaGGugCAGGUC-CCg -3'
miRNA:   3'- cGCGGUGCa--GGag---CUugGUCUAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 131694 0.66 0.947459
Target:  5'- cGCGCgGCGcuggaccgCCUCGAgaGCCAGGcggcgcgCUUCg -3'
miRNA:   3'- -CGCGgUGCa-------GGAGCU--UGGUCUa------GAGG- -5'
23750 3' -54.2 NC_005261.1 + 85376 0.66 0.943016
Target:  5'- cGCGCCGcCGcCCUCGGGCUucuGGUaggcgCCc -3'
miRNA:   3'- -CGCGGU-GCaGGAGCUUGGu--CUAga---GG- -5'
23750 3' -54.2 NC_005261.1 + 115428 0.66 0.947025
Target:  5'- gGgGCCGCGgCC-CGAgcucgcgcucgcgGCCGGA-CUCCu -3'
miRNA:   3'- -CgCGGUGCaGGaGCU-------------UGGUCUaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 106939 0.66 0.947459
Target:  5'- aGCGaCACGcgcaCCUCGGcCCGGGcgcgCUCCg -3'
miRNA:   3'- -CGCgGUGCa---GGAGCUuGGUCUa---GAGG- -5'
23750 3' -54.2 NC_005261.1 + 126536 0.66 0.962916
Target:  5'- cCGCCGCG-CCUCG-GCCAcGcgCcgCCg -3'
miRNA:   3'- cGCGGUGCaGGAGCuUGGU-CuaGa-GG- -5'
23750 3' -54.2 NC_005261.1 + 100312 0.66 0.947459
Target:  5'- cGCGUCGCGgg--CGcGCUcGAUCUCCa -3'
miRNA:   3'- -CGCGGUGCaggaGCuUGGuCUAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 133659 0.66 0.944822
Target:  5'- aGCGCUGCGUgCUCGccuCCGGcgccaacggcucgCUCCg -3'
miRNA:   3'- -CGCGGUGCAgGAGCuu-GGUCua-----------GAGG- -5'
23750 3' -54.2 NC_005261.1 + 77609 0.66 0.943016
Target:  5'- cCGCCGgGg-CUCGAgaGCCAGAUCauggCCc -3'
miRNA:   3'- cGCGGUgCagGAGCU--UGGUCUAGa---GG- -5'
23750 3' -54.2 NC_005261.1 + 121075 0.66 0.951667
Target:  5'- uGCGCgGCG-CCggCGGccGCCAGcgcCUCCa -3'
miRNA:   3'- -CGCGgUGCaGGa-GCU--UGGUCua-GAGG- -5'
23750 3' -54.2 NC_005261.1 + 11944 0.66 0.947459
Target:  5'- cGCGCCGCGgcggCUCGc-CCGGcgcgcgCUCCa -3'
miRNA:   3'- -CGCGGUGCag--GAGCuuGGUCua----GAGG- -5'
23750 3' -54.2 NC_005261.1 + 85031 0.66 0.951667
Target:  5'- cCGCCGCGcCC-CG-GCCAcGAUCgCCg -3'
miRNA:   3'- cGCGGUGCaGGaGCuUGGU-CUAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 88859 0.66 0.947459
Target:  5'- uGgGCCGCG-CCUCGcgggaCAGccUCUCCg -3'
miRNA:   3'- -CgCGGUGCaGGAGCuug--GUCu-AGAGG- -5'
23750 3' -54.2 NC_005261.1 + 64120 0.66 0.951667
Target:  5'- gGCGgCACGUgCCgcgCGGccGCCAGcgCgUCCu -3'
miRNA:   3'- -CGCgGUGCA-GGa--GCU--UGGUCuaG-AGG- -5'
23750 3' -54.2 NC_005261.1 + 58083 0.66 0.947025
Target:  5'- gGCGCCagggcccGCGUCCUCGGgcggcACCAG----CCg -3'
miRNA:   3'- -CGCGG-------UGCAGGAGCU-----UGGUCuagaGG- -5'
23750 3' -54.2 NC_005261.1 + 87369 0.66 0.942558
Target:  5'- aGCGCCcaccgcgcggcagAUGUCCUCG-GCCGucGUCUCg -3'
miRNA:   3'- -CGCGG-------------UGCAGGAGCuUGGUc-UAGAGg -5'
23750 3' -54.2 NC_005261.1 + 51492 0.66 0.951667
Target:  5'- gGCGCCGCGcCCcUGAugcucgGCCAGAUgCUg- -3'
miRNA:   3'- -CGCGGUGCaGGaGCU------UGGUCUA-GAgg -5'
23750 3' -54.2 NC_005261.1 + 2267 0.66 0.946589
Target:  5'- gGCGCU-CGUCCUCGccgggcggcgccGCCAGcgcCUCCc -3'
miRNA:   3'- -CGCGGuGCAGGAGCu-----------UGGUCua-GAGG- -5'
23750 3' -54.2 NC_005261.1 + 18030 0.66 0.947459
Target:  5'- aGCGCUcccguccuCGUCCUCGuaaucGCCGGucgaGUCgUCCa -3'
miRNA:   3'- -CGCGGu-------GCAGGAGCu----UGGUC----UAG-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.