Results 61 - 80 of 151 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23750 | 3' | -54.2 | NC_005261.1 | + | 24509 | 0.67 | 0.938335 |
Target: 5'- cGCGCUuauAUGUCCUgUGAGCaAGGUgUCCc -3' miRNA: 3'- -CGCGG---UGCAGGA-GCUUGgUCUAgAGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 97423 | 0.67 | 0.933414 |
Target: 5'- cGCGCCGggccUGcCCUUGGGCgCGGGUCUg- -3' miRNA: 3'- -CGCGGU----GCaGGAGCUUG-GUCUAGAgg -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 88768 | 0.67 | 0.933414 |
Target: 5'- gGCGCUGCGcUCCUCGGcccuggccGCCGGcg--CCg -3' miRNA: 3'- -CGCGGUGC-AGGAGCU--------UGGUCuagaGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 16202 | 0.67 | 0.933414 |
Target: 5'- gGgGCCGCGUgauggCCUCGAggcucgGCCAGccCUCg -3' miRNA: 3'- -CgCGGUGCA-----GGAGCU------UGGUCuaGAGg -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 67991 | 0.68 | 0.892252 |
Target: 5'- cCGCaGCGUCgUCGcgcacAACgGGGUCUCCu -3' miRNA: 3'- cGCGgUGCAGgAGC-----UUGgUCUAGAGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 70334 | 0.68 | 0.898844 |
Target: 5'- gGCGCaCGCGUCgagCGGGCCGGGga-CCg -3' miRNA: 3'- -CGCG-GUGCAGga-GCUUGGUCUagaGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 126260 | 0.68 | 0.898844 |
Target: 5'- cCGCCGCGUCCaaGAaGCCGuc-CUCCa -3' miRNA: 3'- cGCGGUGCAGGagCU-UGGUcuaGAGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 109070 | 0.68 | 0.903319 |
Target: 5'- -aGCgGCG-CCUCGGcgaucaugccguugGCCAGGUC-CCg -3' miRNA: 3'- cgCGgUGCaGGAGCU--------------UGGUCUAGaGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 64288 | 0.68 | 0.905202 |
Target: 5'- aGCGCCGCGUCCagCGuGCgCAuGUUUCg -3' miRNA: 3'- -CGCGGUGCAGGa-GCuUG-GUcUAGAGg -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 36966 | 0.68 | 0.905202 |
Target: 5'- cGCGCgGCGcagagCUCGGugCGGG-CUCCa -3' miRNA: 3'- -CGCGgUGCag---GAGCUugGUCUaGAGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 59090 | 0.68 | 0.905202 |
Target: 5'- uGCGCCGCGcCCUCGcGCUcgcAGGcgcgcgcgagCUCCc -3' miRNA: 3'- -CGCGGUGCaGGAGCuUGG---UCUa---------GAGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 106295 | 0.68 | 0.892252 |
Target: 5'- aCGCCGuCGaCCUCGGcgAgCAGGUCUuCCg -3' miRNA: 3'- cGCGGU-GCaGGAGCU--UgGUCUAGA-GG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 126810 | 0.68 | 0.88543 |
Target: 5'- aGCGCgGCGUCUgCGua-CAGGUCUgCg -3' miRNA: 3'- -CGCGgUGCAGGaGCuugGUCUAGAgG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 47210 | 0.68 | 0.88543 |
Target: 5'- -aGUCGCGcUCCUCGccGCCGGggCUCa -3' miRNA: 3'- cgCGGUGC-AGGAGCu-UGGUCuaGAGg -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 1666 | 0.68 | 0.88543 |
Target: 5'- cGCgGCCAUGUCCUUGcGCCc-GUCgagCCg -3' miRNA: 3'- -CG-CGGUGCAGGAGCuUGGucUAGa--GG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 41145 | 0.68 | 0.90768 |
Target: 5'- cGCGCCAgccgccgguaggcuuCGUCCacgCGGcCCGGGUCcaggCCg -3' miRNA: 3'- -CGCGGU---------------GCAGGa--GCUuGGUCUAGa---GG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 108440 | 0.68 | 0.910723 |
Target: 5'- cGCGUCccggccgagcagcGCGUCgUCGGcgaGGAUCUCCg -3' miRNA: 3'- -CGCGG-------------UGCAGgAGCUuggUCUAGAGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 18639 | 0.68 | 0.911324 |
Target: 5'- -gGCCAgGUCCaaGGcucCCAGGUCUCg -3' miRNA: 3'- cgCGGUgCAGGagCUu--GGUCUAGAGg -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 2421 | 0.68 | 0.911324 |
Target: 5'- cGCGCgGCGg---CGGGCCGcGAUCUCg -3' miRNA: 3'- -CGCGgUGCaggaGCUUGGU-CUAGAGg -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 103252 | 0.68 | 0.911324 |
Target: 5'- cGCGcCCGCGUCCgCGca-CAGccgCUCCa -3' miRNA: 3'- -CGC-GGUGCAGGaGCuugGUCua-GAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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