miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23750 3' -54.2 NC_005261.1 + 108948 0.88 0.108846
Target:  5'- aCGCCGCGUCCUCGcGCgcgUAGAUCUCCa -3'
miRNA:   3'- cGCGGUGCAGGAGCuUG---GUCUAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 49311 0.88 0.11
Target:  5'- aGCGCCGCGcagcCCUCGAGCCGGAacucgacgcgguuguUCUCCa -3'
miRNA:   3'- -CGCGGUGCa---GGAGCUUGGUCU---------------AGAGG- -5'
23750 3' -54.2 NC_005261.1 + 58821 0.85 0.16033
Target:  5'- cGCGCCACGUCCUCcaGGcacccgcGCUGGGUCUCCc -3'
miRNA:   3'- -CGCGGUGCAGGAG--CU-------UGGUCUAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 102387 0.79 0.356371
Target:  5'- aGCGCgGCGcgcagcUCCUCGcGCCAGcgCUCCu -3'
miRNA:   3'- -CGCGgUGC------AGGAGCuUGGUCuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 117230 0.78 0.397521
Target:  5'- gGCGCCGagucCG-CCUCGggUCGGGUCUCg -3'
miRNA:   3'- -CGCGGU----GCaGGAGCuuGGUCUAGAGg -5'
23750 3' -54.2 NC_005261.1 + 104132 0.77 0.43256
Target:  5'- uCGCCGCGagCUCGGccGCCAGGUCggCCa -3'
miRNA:   3'- cGCGGUGCagGAGCU--UGGUCUAGa-GG- -5'
23750 3' -54.2 NC_005261.1 + 102681 0.77 0.43256
Target:  5'- aGCGCCGCGUCCgccgCGGccgucgcuGCCGccGUCUCCg -3'
miRNA:   3'- -CGCGGUGCAGGa---GCU--------UGGUc-UAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 102448 0.76 0.469335
Target:  5'- cGCGCCGCccggCCUCGGcgcgcaggcGCCGGAcCUCCu -3'
miRNA:   3'- -CGCGGUGca--GGAGCU---------UGGUCUaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 120331 0.76 0.51743
Target:  5'- cGCGCUGCGUCCcCGAGCgc-GUCUCCc -3'
miRNA:   3'- -CGCGGUGCAGGaGCUUGgucUAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 1341 0.75 0.527292
Target:  5'- cGCGCCGCG-CCU-GcACCAGcGUCUCCc -3'
miRNA:   3'- -CGCGGUGCaGGAgCuUGGUC-UAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 58511 0.75 0.537222
Target:  5'- gGCGcCCGCGUCCagGAGgCGGAUCgagCCc -3'
miRNA:   3'- -CGC-GGUGCAGGagCUUgGUCUAGa--GG- -5'
23750 3' -54.2 NC_005261.1 + 12657 0.75 0.557269
Target:  5'- cGCGCCGgcgcgacaucguCGUCCUCGAG-CGGGUC-CCu -3'
miRNA:   3'- -CGCGGU------------GCAGGAGCUUgGUCUAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 74217 0.75 0.557269
Target:  5'- cGCGCCGCG-CCUCGAggcuauaauaGCCGGG-CgcgCCg -3'
miRNA:   3'- -CGCGGUGCaGGAGCU----------UGGUCUaGa--GG- -5'
23750 3' -54.2 NC_005261.1 + 2332 0.74 0.577524
Target:  5'- aCGCgCACGUCCUCGGgguCCGcGAUCUgCg -3'
miRNA:   3'- cGCG-GUGCAGGAGCUu--GGU-CUAGAgG- -5'
23750 3' -54.2 NC_005261.1 + 70913 0.74 0.587714
Target:  5'- cGCGCCACGUCC-CGcGCgAG--CUCCa -3'
miRNA:   3'- -CGCGGUGCAGGaGCuUGgUCuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 59627 0.74 0.588735
Target:  5'- aGCGCCAggaccucgcggucgcUGUCCUCGAggcgggcgacugcgGCCGGGUCgucgaagCCg -3'
miRNA:   3'- -CGCGGU---------------GCAGGAGCU--------------UGGUCUAGa------GG- -5'
23750 3' -54.2 NC_005261.1 + 61954 0.74 0.608184
Target:  5'- cGCGCCgaccGCGUCCcCcAGCCGGGUCgCCg -3'
miRNA:   3'- -CGCGG----UGCAGGaGcUUGGUCUAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 106983 0.74 0.61845
Target:  5'- cGCGCCGCGcaccgCgUCG-GCCAGGUCcgCCg -3'
miRNA:   3'- -CGCGGUGCa----GgAGCuUGGUCUAGa-GG- -5'
23750 3' -54.2 NC_005261.1 + 5164 0.73 0.639004
Target:  5'- cGgGCCGCGUCgagcaGGGCCGGGUcCUCCu -3'
miRNA:   3'- -CgCGGUGCAGgag--CUUGGUCUA-GAGG- -5'
23750 3' -54.2 NC_005261.1 + 108669 0.73 0.649278
Target:  5'- gGCGUCGCGUCCUCGucguCCGG--CUCg -3'
miRNA:   3'- -CGCGGUGCAGGAGCuu--GGUCuaGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.