miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23750 3' -54.2 NC_005261.1 + 106453 0.73 0.659537
Target:  5'- -gGCCACGUCCgcgCGGgcguccaagagcGCCGGG-CUCCc -3'
miRNA:   3'- cgCGGUGCAGGa--GCU------------UGGUCUaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 70662 0.73 0.669775
Target:  5'- gGCGCCGCGgCCgCGGGCCGcacCUCCa -3'
miRNA:   3'- -CGCGGUGCaGGaGCUUGGUcuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 32611 0.72 0.689133
Target:  5'- uCGuCCGCGUCCUCGGacgacgaGCCGGG-CUCg -3'
miRNA:   3'- cGC-GGUGCAGGAGCU-------UGGUCUaGAGg -5'
23750 3' -54.2 NC_005261.1 + 39220 0.72 0.690148
Target:  5'- cCGCCAUGgcCCUCGcgcgcgccGGCgAGGUCUCCg -3'
miRNA:   3'- cGCGGUGCa-GGAGC--------UUGgUCUAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 102602 0.72 0.690148
Target:  5'- cGCGCCuuccGCGUCCUCGccGCCAGcggcCUCg -3'
miRNA:   3'- -CGCGG----UGCAGGAGCu-UGGUCua--GAGg -5'
23750 3' -54.2 NC_005261.1 + 57305 0.72 0.700266
Target:  5'- cGCGCgACGUCCUCGu-CCAuGA-CUCg -3'
miRNA:   3'- -CGCGgUGCAGGAGCuuGGU-CUaGAGg -5'
23750 3' -54.2 NC_005261.1 + 94471 0.72 0.710327
Target:  5'- cGCGUCGgcguCGUCCcgCGGGCCGGGcacCUCCa -3'
miRNA:   3'- -CGCGGU----GCAGGa-GCUUGGUCUa--GAGG- -5'
23750 3' -54.2 NC_005261.1 + 95938 0.72 0.710327
Target:  5'- aGCGCCAUGUCCgCGcccGCCGGgAUCgaccCCa -3'
miRNA:   3'- -CGCGGUGCAGGaGCu--UGGUC-UAGa---GG- -5'
23750 3' -54.2 NC_005261.1 + 74476 0.72 0.710327
Target:  5'- gGCGCgGCGUgCCU-GGGCgGGAUCUCg -3'
miRNA:   3'- -CGCGgUGCA-GGAgCUUGgUCUAGAGg -5'
23750 3' -54.2 NC_005261.1 + 652 0.72 0.710327
Target:  5'- aGCGCCGCGUCCcCGGcgccgaguccugGCCcuccgcGGAcgCUCCg -3'
miRNA:   3'- -CGCGGUGCAGGaGCU------------UGG------UCUa-GAGG- -5'
23750 3' -54.2 NC_005261.1 + 113683 0.72 0.72032
Target:  5'- cGCGCCcCGUUCgUGGACCAGAg--CCa -3'
miRNA:   3'- -CGCGGuGCAGGaGCUUGGUCUagaGG- -5'
23750 3' -54.2 NC_005261.1 + 107382 0.72 0.72032
Target:  5'- gGCGcCCGCGUCCaCGAacgGCCAGAgC-CCg -3'
miRNA:   3'- -CGC-GGUGCAGGaGCU---UGGUCUaGaGG- -5'
23750 3' -54.2 NC_005261.1 + 21414 0.71 0.740069
Target:  5'- cGCGCCGCG-CCggcCGGugCAGuUCUuCCg -3'
miRNA:   3'- -CGCGGUGCaGGa--GCUugGUCuAGA-GG- -5'
23750 3' -54.2 NC_005261.1 + 102845 0.71 0.759438
Target:  5'- cGCGCCACGUgCU-GGGCCAGcagcgCgUCCa -3'
miRNA:   3'- -CGCGGUGCAgGAgCUUGGUCua---G-AGG- -5'
23750 3' -54.2 NC_005261.1 + 43522 0.71 0.768956
Target:  5'- aGCGCCGugacCGUCCUCGAcuacgACCgcacugAGAUcCUCUa -3'
miRNA:   3'- -CGCGGU----GCAGGAGCU-----UGG------UCUA-GAGG- -5'
23750 3' -54.2 NC_005261.1 + 115658 0.71 0.768956
Target:  5'- gGCGCCGCGUCUaggaucaugUCGcAGCCcaugaGGAUCaugUCCg -3'
miRNA:   3'- -CGCGGUGCAGG---------AGC-UUGG-----UCUAG---AGG- -5'
23750 3' -54.2 NC_005261.1 + 2515 0.71 0.775547
Target:  5'- cGCGCCGCGaCCUCGGggcggcaguaggccGCCAGcg--CCg -3'
miRNA:   3'- -CGCGGUGCaGGAGCU--------------UGGUCuagaGG- -5'
23750 3' -54.2 NC_005261.1 + 31857 0.71 0.778352
Target:  5'- cGCGgCGCGUCUUCGGGCCcGGcgcCUUCg -3'
miRNA:   3'- -CGCgGUGCAGGAGCUUGGuCUa--GAGG- -5'
23750 3' -54.2 NC_005261.1 + 60742 0.7 0.796738
Target:  5'- cGUGCUACGUCCUCaacaAGCCc-GUCUUCa -3'
miRNA:   3'- -CGCGGUGCAGGAGc---UUGGucUAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 115925 0.7 0.796738
Target:  5'- cCGCCGCGUCCgcgcgCGGGgCAGGguaCUCg -3'
miRNA:   3'- cGCGGUGCAGGa----GCUUgGUCUa--GAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.