miRNA display CGI


Results 41 - 60 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23750 3' -54.2 NC_005261.1 + 52431 0.7 0.796738
Target:  5'- gGCGuCCGCGUCCa-GGGCCacgAGGUCcCCg -3'
miRNA:   3'- -CGC-GGUGCAGGagCUUGG---UCUAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 78630 0.7 0.803929
Target:  5'- gGCGCCAgGUCCgccgaguucgcgCGAGCgAGccCUCCc -3'
miRNA:   3'- -CGCGGUgCAGGa-----------GCUUGgUCuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 33028 0.7 0.805711
Target:  5'- gGCGCCgaugcggaGCGUCCgcggaGGGCCAGGaCUCg -3'
miRNA:   3'- -CGCGG--------UGCAGGag---CUUGGUCUaGAGg -5'
23750 3' -54.2 NC_005261.1 + 90261 0.7 0.805711
Target:  5'- gGCGCCAagGUCCUgGAGCCcGAgucgggcUUCCa -3'
miRNA:   3'- -CGCGGUg-CAGGAgCUUGGuCUa------GAGG- -5'
23750 3' -54.2 NC_005261.1 + 19844 0.7 0.805711
Target:  5'- cGCGCgGCGUCCUCGGcuuccucgcGCgAGAcC-CCg -3'
miRNA:   3'- -CGCGgUGCAGGAGCU---------UGgUCUaGaGG- -5'
23750 3' -54.2 NC_005261.1 + 102718 0.7 0.814525
Target:  5'- nCGCCGCGUCCgCGcccgccGCCAGGgcguUCUUCa -3'
miRNA:   3'- cGCGGUGCAGGaGCu-----UGGUCU----AGAGG- -5'
23750 3' -54.2 NC_005261.1 + 1179 0.7 0.814525
Target:  5'- cGCGCCGCGgCCg-GGGCCGGGg--CCg -3'
miRNA:   3'- -CGCGGUGCaGGagCUUGGUCUagaGG- -5'
23750 3' -54.2 NC_005261.1 + 74270 0.7 0.831643
Target:  5'- cGCGCgCGCGUCCgcggCGGGCgGGGcggUCgCCg -3'
miRNA:   3'- -CGCG-GUGCAGGa---GCUUGgUCU---AGaGG- -5'
23750 3' -54.2 NC_005261.1 + 89303 0.7 0.831643
Target:  5'- aCGCCGagGaCCUCGucguCCAGAUCUCg -3'
miRNA:   3'- cGCGGUg-CaGGAGCuu--GGUCUAGAGg -5'
23750 3' -54.2 NC_005261.1 + 106549 0.69 0.839932
Target:  5'- gGCgGCCGCGUCC--GGGCCGGcgCgcgCCg -3'
miRNA:   3'- -CG-CGGUGCAGGagCUUGGUCuaGa--GG- -5'
23750 3' -54.2 NC_005261.1 + 129683 0.69 0.839932
Target:  5'- gGCGUCGCGa-CUCGGGCCGGGg--CCg -3'
miRNA:   3'- -CGCGGUGCagGAGCUUGGUCUagaGG- -5'
23750 3' -54.2 NC_005261.1 + 66785 0.69 0.839932
Target:  5'- cGCGCgaucaugggcugCugGaCCUCGAACUGGAUCgugCCc -3'
miRNA:   3'- -CGCG------------GugCaGGAGCUUGGUCUAGa--GG- -5'
23750 3' -54.2 NC_005261.1 + 2044 0.69 0.843194
Target:  5'- cGCGCCGCGgccagCCgcaggcagagguacUCGAccgcgccgcggaagGCCAGGUC-CCg -3'
miRNA:   3'- -CGCGGUGCa----GG--------------AGCU--------------UGGUCUAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 122880 0.69 0.84803
Target:  5'- uCGCCGaGUCCgacaGAACCAGcgcCUCCg -3'
miRNA:   3'- cGCGGUgCAGGag--CUUGGUCua-GAGG- -5'
23750 3' -54.2 NC_005261.1 + 103391 0.69 0.84803
Target:  5'- cGCGCCGCGgccgCCUgCGccuCCAG--CUCCg -3'
miRNA:   3'- -CGCGGUGCa---GGA-GCuu-GGUCuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 60348 0.69 0.84803
Target:  5'- gGCGCCGCGgCCgCGcGCCAGGcagugcuuggUCUCg -3'
miRNA:   3'- -CGCGGUGCaGGaGCuUGGUCU----------AGAGg -5'
23750 3' -54.2 NC_005261.1 + 62675 0.69 0.85593
Target:  5'- aGCGCCACGUCCgccagcugcaCGcGCCGGcgCagCg -3'
miRNA:   3'- -CGCGGUGCAGGa---------GCuUGGUCuaGagG- -5'
23750 3' -54.2 NC_005261.1 + 111988 0.69 0.85593
Target:  5'- gGCGCUggaGUCCaUGGGCCAGuUCUUCg -3'
miRNA:   3'- -CGCGGug-CAGGaGCUUGGUCuAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 115750 0.69 0.85593
Target:  5'- cGCGCaCACGUCgUCG-GCCccGUCUCg -3'
miRNA:   3'- -CGCG-GUGCAGgAGCuUGGucUAGAGg -5'
23750 3' -54.2 NC_005261.1 + 74582 0.69 0.861339
Target:  5'- cGCGgaCCGCGUCUUCGuGCCGGAcgagcggaacuucaUCgcgCCg -3'
miRNA:   3'- -CGC--GGUGCAGGAGCuUGGUCU--------------AGa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.