Results 21 - 40 of 151 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23750 | 3' | -54.2 | NC_005261.1 | + | 121930 | 0.66 | 0.954475 |
Target: 5'- cCGCCACGcUCUUCagcagcgccagcuuGAACCAGcUCgCCg -3' miRNA: 3'- cGCGGUGC-AGGAG--------------CUUGGUCuAGaGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 103461 | 0.66 | 0.951667 |
Target: 5'- cCGCCGCG-CC-CGucGCCAGggCgUCCa -3' miRNA: 3'- cGCGGUGCaGGaGCu-UGGUCuaG-AGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 85031 | 0.66 | 0.951667 |
Target: 5'- cCGCCGCGcCC-CG-GCCAcGAUCgCCg -3' miRNA: 3'- cGCGGUGCaGGaGCuUGGU-CUAGaGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 99499 | 0.66 | 0.951667 |
Target: 5'- cCGCCGCGUCCUCcgaGGGCCcg--C-CCg -3' miRNA: 3'- cGCGGUGCAGGAG---CUUGGucuaGaGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 51492 | 0.66 | 0.951667 |
Target: 5'- gGCGCCGCGcCCcUGAugcucgGCCAGAUgCUg- -3' miRNA: 3'- -CGCGGUGCaGGaGCU------UGGUCUA-GAgg -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 64120 | 0.66 | 0.951667 |
Target: 5'- gGCGgCACGUgCCgcgCGGccGCCAGcgCgUCCu -3' miRNA: 3'- -CGCgGUGCA-GGa--GCU--UGGUCuaG-AGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 121075 | 0.66 | 0.951667 |
Target: 5'- uGCGCgGCG-CCggCGGccGCCAGcgcCUCCa -3' miRNA: 3'- -CGCGgUGCaGGa-GCU--UGGUCua-GAGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 18030 | 0.66 | 0.947459 |
Target: 5'- aGCGCUcccguccuCGUCCUCGuaaucGCCGGucgaGUCgUCCa -3' miRNA: 3'- -CGCGGu-------GCAGGAGCu----UGGUC----UAG-AGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 100312 | 0.66 | 0.947459 |
Target: 5'- cGCGUCGCGgg--CGcGCUcGAUCUCCa -3' miRNA: 3'- -CGCGGUGCaggaGCuUGGuCUAGAGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 106939 | 0.66 | 0.947459 |
Target: 5'- aGCGaCACGcgcaCCUCGGcCCGGGcgcgCUCCg -3' miRNA: 3'- -CGCgGUGCa---GGAGCUuGGUCUa---GAGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 120538 | 0.66 | 0.947459 |
Target: 5'- cCGCCACGcacgacgCCUCGcccAGCCuGAUCggaagCCc -3' miRNA: 3'- cGCGGUGCa------GGAGC---UUGGuCUAGa----GG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 88859 | 0.66 | 0.947459 |
Target: 5'- uGgGCCGCG-CCUCGcgggaCAGccUCUCCg -3' miRNA: 3'- -CgCGGUGCaGGAGCuug--GUCu-AGAGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 131694 | 0.66 | 0.947459 |
Target: 5'- cGCGCgGCGcuggaccgCCUCGAgaGCCAGGcggcgcgCUUCg -3' miRNA: 3'- -CGCGgUGCa-------GGAGCU--UGGUCUa------GAGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 11944 | 0.66 | 0.947459 |
Target: 5'- cGCGCCGCGgcggCUCGc-CCGGcgcgcgCUCCa -3' miRNA: 3'- -CGCGGUGCag--GAGCuuGGUCua----GAGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 115428 | 0.66 | 0.947025 |
Target: 5'- gGgGCCGCGgCC-CGAgcucgcgcucgcgGCCGGA-CUCCu -3' miRNA: 3'- -CgCGGUGCaGGaGCU-------------UGGUCUaGAGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 58083 | 0.66 | 0.947025 |
Target: 5'- gGCGCCagggcccGCGUCCUCGGgcggcACCAG----CCg -3' miRNA: 3'- -CGCGG-------UGCAGGAGCU-----UGGUCuagaGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 2267 | 0.66 | 0.946589 |
Target: 5'- gGCGCU-CGUCCUCGccgggcggcgccGCCAGcgcCUCCc -3' miRNA: 3'- -CGCGGuGCAGGAGCu-----------UGGUCua-GAGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 133659 | 0.66 | 0.944822 |
Target: 5'- aGCGCUGCGUgCUCGccuCCGGcgccaacggcucgCUCCg -3' miRNA: 3'- -CGCGGUGCAgGAGCuu-GGUCua-----------GAGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 100602 | 0.66 | 0.943016 |
Target: 5'- cCGCCACGcggCCgcgcaGGugCAGGUC-CCg -3' miRNA: 3'- cGCGGUGCa--GGag---CUugGUCUAGaGG- -5' |
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23750 | 3' | -54.2 | NC_005261.1 | + | 85376 | 0.66 | 0.943016 |
Target: 5'- cGCGCCGcCGcCCUCGGGCUucuGGUaggcgCCc -3' miRNA: 3'- -CGCGGU-GCaGGAGCUUGGu--CUAga---GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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