miRNA display CGI


Results 41 - 60 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23750 3' -54.2 NC_005261.1 + 100602 0.66 0.943016
Target:  5'- cCGCCACGcggCCgcgcaGGugCAGGUC-CCg -3'
miRNA:   3'- cGCGGUGCa--GGag---CUugGUCUAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 87369 0.66 0.942558
Target:  5'- aGCGCCcaccgcgcggcagAUGUCCUCG-GCCGucGUCUCg -3'
miRNA:   3'- -CGCGG-------------UGCAGGAGCuUGGUc-UAGAGg -5'
23750 3' -54.2 NC_005261.1 + 109190 0.67 0.938335
Target:  5'- aGCGCCGCGUCgggCGuGCgCAGGcgCUCg -3'
miRNA:   3'- -CGCGGUGCAGga-GCuUG-GUCUa-GAGg -5'
23750 3' -54.2 NC_005261.1 + 122787 0.67 0.938335
Target:  5'- cGCGCCagacgGCGUCCUUagaGAGCCGcGcgC-CCg -3'
miRNA:   3'- -CGCGG-----UGCAGGAG---CUUGGU-CuaGaGG- -5'
23750 3' -54.2 NC_005261.1 + 104176 0.67 0.938335
Target:  5'- gGCGCCGCGcgcgggUCgUCGGGCgGGAcggCgUCCa -3'
miRNA:   3'- -CGCGGUGC------AGgAGCUUGgUCUa--G-AGG- -5'
23750 3' -54.2 NC_005261.1 + 102315 0.67 0.938335
Target:  5'- cGCGCCGCGgCCgCGGcgcgcagccgcGCCAGcUCggCCg -3'
miRNA:   3'- -CGCGGUGCaGGaGCU-----------UGGUCuAGa-GG- -5'
23750 3' -54.2 NC_005261.1 + 24509 0.67 0.938335
Target:  5'- cGCGCUuauAUGUCCUgUGAGCaAGGUgUCCc -3'
miRNA:   3'- -CGCGG---UGCAGGA-GCUUGgUCUAgAGG- -5'
23750 3' -54.2 NC_005261.1 + 80244 0.67 0.938335
Target:  5'- -gGCCACGacgaagCCgccgCGcGCCAGGuacgUCUCCa -3'
miRNA:   3'- cgCGGUGCa-----GGa---GCuUGGUCU----AGAGG- -5'
23750 3' -54.2 NC_005261.1 + 97423 0.67 0.933414
Target:  5'- cGCGCCGggccUGcCCUUGGGCgCGGGUCUg- -3'
miRNA:   3'- -CGCGGU----GCaGGAGCUUG-GUCUAGAgg -5'
23750 3' -54.2 NC_005261.1 + 88768 0.67 0.933414
Target:  5'- gGCGCUGCGcUCCUCGGcccuggccGCCGGcg--CCg -3'
miRNA:   3'- -CGCGGUGC-AGGAGCU--------UGGUCuagaGG- -5'
23750 3' -54.2 NC_005261.1 + 16202 0.67 0.933414
Target:  5'- gGgGCCGCGUgauggCCUCGAggcucgGCCAGccCUCg -3'
miRNA:   3'- -CgCGGUGCA-----GGAGCU------UGGUCuaGAGg -5'
23750 3' -54.2 NC_005261.1 + 116044 0.67 0.930347
Target:  5'- uGCGCCACGauggCCUUGGcgccccgcguggcgcGCCGG-UCcCCg -3'
miRNA:   3'- -CGCGGUGCa---GGAGCU---------------UGGUCuAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 72675 0.67 0.928253
Target:  5'- gGCGUCAUcUCCcgcgCGAACCGGcgCgCCa -3'
miRNA:   3'- -CGCGGUGcAGGa---GCUUGGUCuaGaGG- -5'
23750 3' -54.2 NC_005261.1 + 47701 0.67 0.928253
Target:  5'- gGCGCCGCGUCggCGgcgUCGGGggcCUCCu -3'
miRNA:   3'- -CGCGGUGCAGgaGCuu-GGUCUa--GAGG- -5'
23750 3' -54.2 NC_005261.1 + 54536 0.67 0.927724
Target:  5'- cGCGCCAucgccguugucguCGUCCgUCGAcACgAGAaaCUCCg -3'
miRNA:   3'- -CGCGGU-------------GCAGG-AGCU-UGgUCUa-GAGG- -5'
23750 3' -54.2 NC_005261.1 + 120378 0.67 0.922851
Target:  5'- gGCGCCGCGcCCUCGcgcaccGAgCAGAgcggcgUCUgCg -3'
miRNA:   3'- -CGCGGUGCaGGAGC------UUgGUCU------AGAgG- -5'
23750 3' -54.2 NC_005261.1 + 74979 0.67 0.922851
Target:  5'- cGCGcCCGCG-CCg-GGugCAGAUCgCCa -3'
miRNA:   3'- -CGC-GGUGCaGGagCUugGUCUAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 11240 0.67 0.922851
Target:  5'- cGCGCUuCcUCCUCGAucuCguGGUCUCg -3'
miRNA:   3'- -CGCGGuGcAGGAGCUu--GguCUAGAGg -5'
23750 3' -54.2 NC_005261.1 + 90022 0.67 0.922851
Target:  5'- uGCGCCugGcCCggGAGCgGGGcUUCCu -3'
miRNA:   3'- -CGCGGugCaGGagCUUGgUCUaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 80977 0.67 0.917208
Target:  5'- aGCGCCAC-UUCUUGuccACCAGGUC-Cg -3'
miRNA:   3'- -CGCGGUGcAGGAGCu--UGGUCUAGaGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.