miRNA display CGI


Results 61 - 80 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23750 3' -54.2 NC_005261.1 + 50916 0.67 0.917208
Target:  5'- gGCGCCGCcUCgC-CGGGCgCGGggCUCCc -3'
miRNA:   3'- -CGCGGUGcAG-GaGCUUG-GUCuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 136653 0.67 0.917208
Target:  5'- cCGCCugGagCUCGAugaGGAUCUCg -3'
miRNA:   3'- cGCGGugCagGAGCUuggUCUAGAGg -5'
23750 3' -54.2 NC_005261.1 + 80977 0.67 0.917208
Target:  5'- aGCGCCAC-UUCUUGuccACCAGGUC-Cg -3'
miRNA:   3'- -CGCGGUGcAGGAGCu--UGGUCUAGaGg -5'
23750 3' -54.2 NC_005261.1 + 64852 0.67 0.917208
Target:  5'- aGCGCCAUGaCCgcgucgCGucCCAGAUCagCg -3'
miRNA:   3'- -CGCGGUGCaGGa-----GCuuGGUCUAGagG- -5'
23750 3' -54.2 NC_005261.1 + 18639 0.68 0.911324
Target:  5'- -gGCCAgGUCCaaGGcucCCAGGUCUCg -3'
miRNA:   3'- cgCGGUgCAGGagCUu--GGUCUAGAGg -5'
23750 3' -54.2 NC_005261.1 + 2421 0.68 0.911324
Target:  5'- cGCGCgGCGg---CGGGCCGcGAUCUCg -3'
miRNA:   3'- -CGCGgUGCaggaGCUUGGU-CUAGAGg -5'
23750 3' -54.2 NC_005261.1 + 103252 0.68 0.911324
Target:  5'- cGCGcCCGCGUCCgCGca-CAGccgCUCCa -3'
miRNA:   3'- -CGC-GGUGCAGGaGCuugGUCua-GAGG- -5'
23750 3' -54.2 NC_005261.1 + 108440 0.68 0.910723
Target:  5'- cGCGUCccggccgagcagcGCGUCgUCGGcgaGGAUCUCCg -3'
miRNA:   3'- -CGCGG-------------UGCAGgAGCUuggUCUAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 41145 0.68 0.90768
Target:  5'- cGCGCCAgccgccgguaggcuuCGUCCacgCGGcCCGGGUCcaggCCg -3'
miRNA:   3'- -CGCGGU---------------GCAGGa--GCUuGGUCUAGa---GG- -5'
23750 3' -54.2 NC_005261.1 + 59090 0.68 0.905202
Target:  5'- uGCGCCGCGcCCUCGcGCUcgcAGGcgcgcgcgagCUCCc -3'
miRNA:   3'- -CGCGGUGCaGGAGCuUGG---UCUa---------GAGG- -5'
23750 3' -54.2 NC_005261.1 + 36966 0.68 0.905202
Target:  5'- cGCGCgGCGcagagCUCGGugCGGG-CUCCa -3'
miRNA:   3'- -CGCGgUGCag---GAGCUugGUCUaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 64288 0.68 0.905202
Target:  5'- aGCGCCGCGUCCagCGuGCgCAuGUUUCg -3'
miRNA:   3'- -CGCGGUGCAGGa-GCuUG-GUcUAGAGg -5'
23750 3' -54.2 NC_005261.1 + 92752 0.68 0.905202
Target:  5'- aGCGCCgcccGCGcCgCUCGGACCGGGcCgagCCc -3'
miRNA:   3'- -CGCGG----UGCaG-GAGCUUGGUCUaGa--GG- -5'
23750 3' -54.2 NC_005261.1 + 107015 0.68 0.905202
Target:  5'- aGCGCCACGUgCCcaaGGAgCAGggCgcgCCa -3'
miRNA:   3'- -CGCGGUGCA-GGag-CUUgGUCuaGa--GG- -5'
23750 3' -54.2 NC_005261.1 + 109070 0.68 0.903319
Target:  5'- -aGCgGCG-CCUCGGcgaucaugccguugGCCAGGUC-CCg -3'
miRNA:   3'- cgCGgUGCaGGAGCU--------------UGGUCUAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 70334 0.68 0.898844
Target:  5'- gGCGCaCGCGUCgagCGGGCCGGGga-CCg -3'
miRNA:   3'- -CGCG-GUGCAGga-GCUUGGUCUagaGG- -5'
23750 3' -54.2 NC_005261.1 + 126260 0.68 0.898844
Target:  5'- cCGCCGCGUCCaaGAaGCCGuc-CUCCa -3'
miRNA:   3'- cGCGGUGCAGGagCU-UGGUcuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 106295 0.68 0.892252
Target:  5'- aCGCCGuCGaCCUCGGcgAgCAGGUCUuCCg -3'
miRNA:   3'- cGCGGU-GCaGGAGCU--UgGUCUAGA-GG- -5'
23750 3' -54.2 NC_005261.1 + 67991 0.68 0.892252
Target:  5'- cCGCaGCGUCgUCGcgcacAACgGGGUCUCCu -3'
miRNA:   3'- cGCGgUGCAGgAGC-----UUGgUCUAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 126810 0.68 0.88543
Target:  5'- aGCGCgGCGUCUgCGua-CAGGUCUgCg -3'
miRNA:   3'- -CGCGgUGCAGGaGCuugGUCUAGAgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.