miRNA display CGI


Results 81 - 100 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23750 3' -54.2 NC_005261.1 + 47210 0.68 0.88543
Target:  5'- -aGUCGCGcUCCUCGccGCCGGggCUCa -3'
miRNA:   3'- cgCGGUGC-AGGAGCu-UGGUCuaGAGg -5'
23750 3' -54.2 NC_005261.1 + 126810 0.68 0.88543
Target:  5'- aGCGCgGCGUCUgCGua-CAGGUCUgCg -3'
miRNA:   3'- -CGCGgUGCAGGaGCuugGUCUAGAgG- -5'
23750 3' -54.2 NC_005261.1 + 101941 0.69 0.878382
Target:  5'- aCGCCACGUaCUuggCGAGCCGGggCacggCCg -3'
miRNA:   3'- cGCGGUGCA-GGa--GCUUGGUCuaGa---GG- -5'
23750 3' -54.2 NC_005261.1 + 55947 0.69 0.871112
Target:  5'- cCGUUugGcUCCcCGGcGCCGGGUCUCCc -3'
miRNA:   3'- cGCGGugC-AGGaGCU-UGGUCUAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 73123 0.69 0.871112
Target:  5'- cGCGuCCGCGcggUCCcCGGGCCGGG-CUCg -3'
miRNA:   3'- -CGC-GGUGC---AGGaGCUUGGUCUaGAGg -5'
23750 3' -54.2 NC_005261.1 + 68184 0.69 0.871112
Target:  5'- cGCGCCGCGggcccCCUCGcccccgccGCCGGcgCggCCg -3'
miRNA:   3'- -CGCGGUGCa----GGAGCu-------UGGUCuaGa-GG- -5'
23750 3' -54.2 NC_005261.1 + 39018 0.69 0.863626
Target:  5'- cGCGCagaGCGUCCgCGAGCag---CUCCa -3'
miRNA:   3'- -CGCGg--UGCAGGaGCUUGgucuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 107906 0.69 0.863626
Target:  5'- cGCgGCCGCGgCCUCGGccacgagugccGCgCGGAUCgCCg -3'
miRNA:   3'- -CG-CGGUGCaGGAGCU-----------UG-GUCUAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 96893 0.69 0.863626
Target:  5'- cGCGCCucgGCGUCCgcc-AgCAGAUCUCg -3'
miRNA:   3'- -CGCGG---UGCAGGagcuUgGUCUAGAGg -5'
23750 3' -54.2 NC_005261.1 + 47000 0.69 0.863626
Target:  5'- cGCGCCGCG-CCgccgCGAugCGGcggUCCa -3'
miRNA:   3'- -CGCGGUGCaGGa---GCUugGUCuagAGG- -5'
23750 3' -54.2 NC_005261.1 + 131450 0.69 0.863626
Target:  5'- uGCGCCGCG-CCUCGcgggcGCCucccgcCUCCg -3'
miRNA:   3'- -CGCGGUGCaGGAGCu----UGGucua--GAGG- -5'
23750 3' -54.2 NC_005261.1 + 74582 0.69 0.861339
Target:  5'- cGCGgaCCGCGUCUUCGuGCCGGAcgagcggaacuucaUCgcgCCg -3'
miRNA:   3'- -CGC--GGUGCAGGAGCuUGGUCU--------------AGa--GG- -5'
23750 3' -54.2 NC_005261.1 + 115750 0.69 0.85593
Target:  5'- cGCGCaCACGUCgUCG-GCCccGUCUCg -3'
miRNA:   3'- -CGCG-GUGCAGgAGCuUGGucUAGAGg -5'
23750 3' -54.2 NC_005261.1 + 111988 0.69 0.85593
Target:  5'- gGCGCUggaGUCCaUGGGCCAGuUCUUCg -3'
miRNA:   3'- -CGCGGug-CAGGaGCUUGGUCuAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 62675 0.69 0.85593
Target:  5'- aGCGCCACGUCCgccagcugcaCGcGCCGGcgCagCg -3'
miRNA:   3'- -CGCGGUGCAGGa---------GCuUGGUCuaGagG- -5'
23750 3' -54.2 NC_005261.1 + 60348 0.69 0.84803
Target:  5'- gGCGCCGCGgCCgCGcGCCAGGcagugcuuggUCUCg -3'
miRNA:   3'- -CGCGGUGCaGGaGCuUGGUCU----------AGAGg -5'
23750 3' -54.2 NC_005261.1 + 122880 0.69 0.84803
Target:  5'- uCGCCGaGUCCgacaGAACCAGcgcCUCCg -3'
miRNA:   3'- cGCGGUgCAGGag--CUUGGUCua-GAGG- -5'
23750 3' -54.2 NC_005261.1 + 103391 0.69 0.84803
Target:  5'- cGCGCCGCGgccgCCUgCGccuCCAG--CUCCg -3'
miRNA:   3'- -CGCGGUGCa---GGA-GCuu-GGUCuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 2044 0.69 0.843194
Target:  5'- cGCGCCGCGgccagCCgcaggcagagguacUCGAccgcgccgcggaagGCCAGGUC-CCg -3'
miRNA:   3'- -CGCGGUGCa----GG--------------AGCU--------------UGGUCUAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 66785 0.69 0.839932
Target:  5'- cGCGCgaucaugggcugCugGaCCUCGAACUGGAUCgugCCc -3'
miRNA:   3'- -CGCG------------GugCaGGAGCUUGGUCUAGa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.