miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23750 3' -54.2 NC_005261.1 + 652 0.72 0.710327
Target:  5'- aGCGCCGCGUCCcCGGcgccgaguccugGCCcuccgcGGAcgCUCCg -3'
miRNA:   3'- -CGCGGUGCAGGaGCU------------UGG------UCUa-GAGG- -5'
23750 3' -54.2 NC_005261.1 + 1179 0.7 0.814525
Target:  5'- cGCGCCGCGgCCg-GGGCCGGGg--CCg -3'
miRNA:   3'- -CGCGGUGCaGGagCUUGGUCUagaGG- -5'
23750 3' -54.2 NC_005261.1 + 1341 0.75 0.527292
Target:  5'- cGCGCCGCG-CCU-GcACCAGcGUCUCCc -3'
miRNA:   3'- -CGCGGUGCaGGAgCuUGGUC-UAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 1666 0.68 0.88543
Target:  5'- cGCgGCCAUGUCCUUGcGCCc-GUCgagCCg -3'
miRNA:   3'- -CG-CGGUGCAGGAGCuUGGucUAGa--GG- -5'
23750 3' -54.2 NC_005261.1 + 2044 0.69 0.843194
Target:  5'- cGCGCCGCGgccagCCgcaggcagagguacUCGAccgcgccgcggaagGCCAGGUC-CCg -3'
miRNA:   3'- -CGCGGUGCa----GG--------------AGCU--------------UGGUCUAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 2267 0.66 0.946589
Target:  5'- gGCGCU-CGUCCUCGccgggcggcgccGCCAGcgcCUCCc -3'
miRNA:   3'- -CGCGGuGCAGGAGCu-----------UGGUCua-GAGG- -5'
23750 3' -54.2 NC_005261.1 + 2332 0.74 0.577524
Target:  5'- aCGCgCACGUCCUCGGgguCCGcGAUCUgCg -3'
miRNA:   3'- cGCG-GUGCAGGAGCUu--GGU-CUAGAgG- -5'
23750 3' -54.2 NC_005261.1 + 2421 0.68 0.911324
Target:  5'- cGCGCgGCGg---CGGGCCGcGAUCUCg -3'
miRNA:   3'- -CGCGgUGCaggaGCUUGGU-CUAGAGg -5'
23750 3' -54.2 NC_005261.1 + 2515 0.71 0.775547
Target:  5'- cGCGCCGCGaCCUCGGggcggcaguaggccGCCAGcg--CCg -3'
miRNA:   3'- -CGCGGUGCaGGAGCU--------------UGGUCuagaGG- -5'
23750 3' -54.2 NC_005261.1 + 3342 0.66 0.959391
Target:  5'- cGCGCCGCGgcgCC-CGGcgcGCCGGc-CUUCa -3'
miRNA:   3'- -CGCGGUGCa--GGaGCU---UGGUCuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 4311 0.66 0.962916
Target:  5'- cCGCCGCGUagcgcgcggccgCCUCG---CGGAUCUCg -3'
miRNA:   3'- cGCGGUGCA------------GGAGCuugGUCUAGAGg -5'
23750 3' -54.2 NC_005261.1 + 4960 0.66 0.962916
Target:  5'- gGCGCCcccggccgcgGCGUCCUCugGGGcCCGGAgggCgCCg -3'
miRNA:   3'- -CGCGG----------UGCAGGAG--CUU-GGUCUa--GaGG- -5'
23750 3' -54.2 NC_005261.1 + 5164 0.73 0.639004
Target:  5'- cGgGCCGCGUCgagcaGGGCCGGGUcCUCCu -3'
miRNA:   3'- -CgCGGUGCAGgag--CUUGGUCUA-GAGG- -5'
23750 3' -54.2 NC_005261.1 + 11240 0.67 0.922851
Target:  5'- cGCGCUuCcUCCUCGAucuCguGGUCUCg -3'
miRNA:   3'- -CGCGGuGcAGGAGCUu--GguCUAGAGg -5'
23750 3' -54.2 NC_005261.1 + 11944 0.66 0.947459
Target:  5'- cGCGCCGCGgcggCUCGc-CCGGcgcgcgCUCCa -3'
miRNA:   3'- -CGCGGUGCag--GAGCuuGGUCua----GAGG- -5'
23750 3' -54.2 NC_005261.1 + 12657 0.75 0.557269
Target:  5'- cGCGCCGgcgcgacaucguCGUCCUCGAG-CGGGUC-CCu -3'
miRNA:   3'- -CGCGGU------------GCAGGAGCUUgGUCUAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 16202 0.67 0.933414
Target:  5'- gGgGCCGCGUgauggCCUCGAggcucgGCCAGccCUCg -3'
miRNA:   3'- -CgCGGUGCA-----GGAGCU------UGGUCuaGAGg -5'
23750 3' -54.2 NC_005261.1 + 16632 0.66 0.955643
Target:  5'- cGCGCCGag-CUUCGAgaACCAGcaGUCcCCg -3'
miRNA:   3'- -CGCGGUgcaGGAGCU--UGGUC--UAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 18030 0.66 0.947459
Target:  5'- aGCGCUcccguccuCGUCCUCGuaaucGCCGGucgaGUCgUCCa -3'
miRNA:   3'- -CGCGGu-------GCAGGAGCu----UGGUC----UAG-AGG- -5'
23750 3' -54.2 NC_005261.1 + 18639 0.68 0.911324
Target:  5'- -gGCCAgGUCCaaGGcucCCAGGUCUCg -3'
miRNA:   3'- cgCGGUgCAGGagCUu--GGUCUAGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.