miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23750 3' -54.2 NC_005261.1 + 19844 0.7 0.805711
Target:  5'- cGCGCgGCGUCCUCGGcuuccucgcGCgAGAcC-CCg -3'
miRNA:   3'- -CGCGgUGCAGGAGCU---------UGgUCUaGaGG- -5'
23750 3' -54.2 NC_005261.1 + 21414 0.71 0.740069
Target:  5'- cGCGCCGCG-CCggcCGGugCAGuUCUuCCg -3'
miRNA:   3'- -CGCGGUGCaGGa--GCUugGUCuAGA-GG- -5'
23750 3' -54.2 NC_005261.1 + 24509 0.67 0.938335
Target:  5'- cGCGCUuauAUGUCCUgUGAGCaAGGUgUCCc -3'
miRNA:   3'- -CGCGG---UGCAGGA-GCUUGgUCUAgAGG- -5'
23750 3' -54.2 NC_005261.1 + 24541 0.66 0.959391
Target:  5'- cGC-CCACGUaCCUggcCGGgcggcGCCAGGUC-CCa -3'
miRNA:   3'- -CGcGGUGCA-GGA---GCU-----UGGUCUAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 31857 0.71 0.778352
Target:  5'- cGCGgCGCGUCUUCGGGCCcGGcgcCUUCg -3'
miRNA:   3'- -CGCgGUGCAGGAGCUUGGuCUa--GAGG- -5'
23750 3' -54.2 NC_005261.1 + 32331 0.66 0.955643
Target:  5'- gGCGCCcgGCGUggCCUgggacgCGGACCAGggC-CCg -3'
miRNA:   3'- -CGCGG--UGCA--GGA------GCUUGGUCuaGaGG- -5'
23750 3' -54.2 NC_005261.1 + 32611 0.72 0.689133
Target:  5'- uCGuCCGCGUCCUCGGacgacgaGCCGGG-CUCg -3'
miRNA:   3'- cGC-GGUGCAGGAGCU-------UGGUCUaGAGg -5'
23750 3' -54.2 NC_005261.1 + 33028 0.7 0.805711
Target:  5'- gGCGCCgaugcggaGCGUCCgcggaGGGCCAGGaCUCg -3'
miRNA:   3'- -CGCGG--------UGCAGGag---CUUGGUCUaGAGg -5'
23750 3' -54.2 NC_005261.1 + 36966 0.68 0.905202
Target:  5'- cGCGCgGCGcagagCUCGGugCGGG-CUCCa -3'
miRNA:   3'- -CGCGgUGCag---GAGCUugGUCUaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 39018 0.69 0.863626
Target:  5'- cGCGCagaGCGUCCgCGAGCag---CUCCa -3'
miRNA:   3'- -CGCGg--UGCAGGaGCUUGgucuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 39220 0.72 0.690148
Target:  5'- cCGCCAUGgcCCUCGcgcgcgccGGCgAGGUCUCCg -3'
miRNA:   3'- cGCGGUGCa-GGAGC--------UUGgUCUAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 41145 0.68 0.90768
Target:  5'- cGCGCCAgccgccgguaggcuuCGUCCacgCGGcCCGGGUCcaggCCg -3'
miRNA:   3'- -CGCGGU---------------GCAGGa--GCUuGGUCUAGa---GG- -5'
23750 3' -54.2 NC_005261.1 + 43522 0.71 0.768956
Target:  5'- aGCGCCGugacCGUCCUCGAcuacgACCgcacugAGAUcCUCUa -3'
miRNA:   3'- -CGCGGU----GCAGGAGCU-----UGG------UCUA-GAGG- -5'
23750 3' -54.2 NC_005261.1 + 47000 0.69 0.863626
Target:  5'- cGCGCCGCG-CCgccgCGAugCGGcggUCCa -3'
miRNA:   3'- -CGCGGUGCaGGa---GCUugGUCuagAGG- -5'
23750 3' -54.2 NC_005261.1 + 47210 0.68 0.88543
Target:  5'- -aGUCGCGcUCCUCGccGCCGGggCUCa -3'
miRNA:   3'- cgCGGUGC-AGGAGCu-UGGUCuaGAGg -5'
23750 3' -54.2 NC_005261.1 + 47701 0.67 0.928253
Target:  5'- gGCGCCGCGUCggCGgcgUCGGGggcCUCCu -3'
miRNA:   3'- -CGCGGUGCAGgaGCuu-GGUCUa--GAGG- -5'
23750 3' -54.2 NC_005261.1 + 49311 0.88 0.11
Target:  5'- aGCGCCGCGcagcCCUCGAGCCGGAacucgacgcgguuguUCUCCa -3'
miRNA:   3'- -CGCGGUGCa---GGAGCUUGGUCU---------------AGAGG- -5'
23750 3' -54.2 NC_005261.1 + 50574 0.66 0.959391
Target:  5'- cGCGCCugGCGUCCgccgCGAGCgGGGa---- -3'
miRNA:   3'- -CGCGG--UGCAGGa---GCUUGgUCUagagg -5'
23750 3' -54.2 NC_005261.1 + 50916 0.67 0.917208
Target:  5'- gGCGCCGCcUCgC-CGGGCgCGGggCUCCc -3'
miRNA:   3'- -CGCGGUGcAG-GaGCUUG-GUCuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 51492 0.66 0.951667
Target:  5'- gGCGCCGCGcCCcUGAugcucgGCCAGAUgCUg- -3'
miRNA:   3'- -CGCGGUGCaGGaGCU------UGGUCUA-GAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.