miRNA display CGI


Results 41 - 60 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23750 3' -54.2 NC_005261.1 + 52431 0.7 0.796738
Target:  5'- gGCGuCCGCGUCCa-GGGCCacgAGGUCcCCg -3'
miRNA:   3'- -CGC-GGUGCAGGagCUUGG---UCUAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 54268 0.66 0.959027
Target:  5'- gGCGCCGCGcacacuggaCCUCGGgcguuucgcgggcGCCGGuuaacaccagCUCCa -3'
miRNA:   3'- -CGCGGUGCa--------GGAGCU-------------UGGUCua--------GAGG- -5'
23750 3' -54.2 NC_005261.1 + 54536 0.67 0.927724
Target:  5'- cGCGCCAucgccguugucguCGUCCgUCGAcACgAGAaaCUCCg -3'
miRNA:   3'- -CGCGGU-------------GCAGG-AGCU-UGgUCUa-GAGG- -5'
23750 3' -54.2 NC_005261.1 + 55947 0.69 0.871112
Target:  5'- cCGUUugGcUCCcCGGcGCCGGGUCUCCc -3'
miRNA:   3'- cGCGGugC-AGGaGCU-UGGUCUAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 57305 0.72 0.700266
Target:  5'- cGCGCgACGUCCUCGu-CCAuGA-CUCg -3'
miRNA:   3'- -CGCGgUGCAGGAGCuuGGU-CUaGAGg -5'
23750 3' -54.2 NC_005261.1 + 58083 0.66 0.947025
Target:  5'- gGCGCCagggcccGCGUCCUCGGgcggcACCAG----CCg -3'
miRNA:   3'- -CGCGG-------UGCAGGAGCU-----UGGUCuagaGG- -5'
23750 3' -54.2 NC_005261.1 + 58511 0.75 0.537222
Target:  5'- gGCGcCCGCGUCCagGAGgCGGAUCgagCCc -3'
miRNA:   3'- -CGC-GGUGCAGGagCUUgGUCUAGa--GG- -5'
23750 3' -54.2 NC_005261.1 + 58821 0.85 0.16033
Target:  5'- cGCGCCACGUCCUCcaGGcacccgcGCUGGGUCUCCc -3'
miRNA:   3'- -CGCGGUGCAGGAG--CU-------UGGUCUAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 59090 0.68 0.905202
Target:  5'- uGCGCCGCGcCCUCGcGCUcgcAGGcgcgcgcgagCUCCc -3'
miRNA:   3'- -CGCGGUGCaGGAGCuUGG---UCUa---------GAGG- -5'
23750 3' -54.2 NC_005261.1 + 59387 0.67 0.917208
Target:  5'- cGCGCCACGgcgcCGAGCCcGggCUCg -3'
miRNA:   3'- -CGCGGUGCaggaGCUUGGuCuaGAGg -5'
23750 3' -54.2 NC_005261.1 + 59627 0.74 0.588735
Target:  5'- aGCGCCAggaccucgcggucgcUGUCCUCGAggcgggcgacugcgGCCGGGUCgucgaagCCg -3'
miRNA:   3'- -CGCGGU---------------GCAGGAGCU--------------UGGUCUAGa------GG- -5'
23750 3' -54.2 NC_005261.1 + 60348 0.69 0.84803
Target:  5'- gGCGCCGCGgCCgCGcGCCAGGcagugcuuggUCUCg -3'
miRNA:   3'- -CGCGGUGCaGGaGCuUGGUCU----------AGAGg -5'
23750 3' -54.2 NC_005261.1 + 60742 0.7 0.796738
Target:  5'- cGUGCUACGUCCUCaacaAGCCc-GUCUUCa -3'
miRNA:   3'- -CGCGGUGCAGGAGc---UUGGucUAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 61954 0.74 0.608184
Target:  5'- cGCGCCgaccGCGUCCcCcAGCCGGGUCgCCg -3'
miRNA:   3'- -CGCGG----UGCAGGaGcUUGGUCUAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 62022 0.66 0.962916
Target:  5'- aGCGCCGucugcCGUCCUCccgcggcucGGCCGG--CUCCa -3'
miRNA:   3'- -CGCGGU-----GCAGGAGc--------UUGGUCuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 62675 0.69 0.85593
Target:  5'- aGCGCCACGUCCgccagcugcaCGcGCCGGcgCagCg -3'
miRNA:   3'- -CGCGGUGCAGGa---------GCuUGGUCuaGagG- -5'
23750 3' -54.2 NC_005261.1 + 64120 0.66 0.951667
Target:  5'- gGCGgCACGUgCCgcgCGGccGCCAGcgCgUCCu -3'
miRNA:   3'- -CGCgGUGCA-GGa--GCU--UGGUCuaG-AGG- -5'
23750 3' -54.2 NC_005261.1 + 64288 0.68 0.905202
Target:  5'- aGCGCCGCGUCCagCGuGCgCAuGUUUCg -3'
miRNA:   3'- -CGCGGUGCAGGa-GCuUG-GUcUAGAGg -5'
23750 3' -54.2 NC_005261.1 + 64852 0.67 0.917208
Target:  5'- aGCGCCAUGaCCgcgucgCGucCCAGAUCagCg -3'
miRNA:   3'- -CGCGGUGCaGGa-----GCuuGGUCUAGagG- -5'
23750 3' -54.2 NC_005261.1 + 66785 0.69 0.839932
Target:  5'- cGCGCgaucaugggcugCugGaCCUCGAACUGGAUCgugCCc -3'
miRNA:   3'- -CGCG------------GugCaGGAGCUUGGUCUAGa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.