miRNA display CGI


Results 61 - 80 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23750 3' -54.2 NC_005261.1 + 67991 0.68 0.892252
Target:  5'- cCGCaGCGUCgUCGcgcacAACgGGGUCUCCu -3'
miRNA:   3'- cGCGgUGCAGgAGC-----UUGgUCUAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 68184 0.69 0.871112
Target:  5'- cGCGCCGCGggcccCCUCGcccccgccGCCGGcgCggCCg -3'
miRNA:   3'- -CGCGGUGCa----GGAGCu-------UGGUCuaGa-GG- -5'
23750 3' -54.2 NC_005261.1 + 70334 0.68 0.898844
Target:  5'- gGCGCaCGCGUCgagCGGGCCGGGga-CCg -3'
miRNA:   3'- -CGCG-GUGCAGga-GCUUGGUCUagaGG- -5'
23750 3' -54.2 NC_005261.1 + 70662 0.73 0.669775
Target:  5'- gGCGCCGCGgCCgCGGGCCGcacCUCCa -3'
miRNA:   3'- -CGCGGUGCaGGaGCUUGGUcuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 70913 0.74 0.587714
Target:  5'- cGCGCCACGUCC-CGcGCgAG--CUCCa -3'
miRNA:   3'- -CGCGGUGCAGGaGCuUGgUCuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 72675 0.67 0.928253
Target:  5'- gGCGUCAUcUCCcgcgCGAACCGGcgCgCCa -3'
miRNA:   3'- -CGCGGUGcAGGa---GCUUGGUCuaGaGG- -5'
23750 3' -54.2 NC_005261.1 + 72974 0.66 0.959391
Target:  5'- cCGCCGCGggggUCCgCGAgcgcgGCCAGcgCgUCCg -3'
miRNA:   3'- cGCGGUGC----AGGaGCU-----UGGUCuaG-AGG- -5'
23750 3' -54.2 NC_005261.1 + 73123 0.69 0.871112
Target:  5'- cGCGuCCGCGcggUCCcCGGGCCGGG-CUCg -3'
miRNA:   3'- -CGC-GGUGC---AGGaGCUUGGUCUaGAGg -5'
23750 3' -54.2 NC_005261.1 + 74217 0.75 0.557269
Target:  5'- cGCGCCGCG-CCUCGAggcuauaauaGCCGGG-CgcgCCg -3'
miRNA:   3'- -CGCGGUGCaGGAGCU----------UGGUCUaGa--GG- -5'
23750 3' -54.2 NC_005261.1 + 74270 0.7 0.831643
Target:  5'- cGCGCgCGCGUCCgcggCGGGCgGGGcggUCgCCg -3'
miRNA:   3'- -CGCG-GUGCAGGa---GCUUGgUCU---AGaGG- -5'
23750 3' -54.2 NC_005261.1 + 74476 0.72 0.710327
Target:  5'- gGCGCgGCGUgCCU-GGGCgGGAUCUCg -3'
miRNA:   3'- -CGCGgUGCA-GGAgCUUGgUCUAGAGg -5'
23750 3' -54.2 NC_005261.1 + 74582 0.69 0.861339
Target:  5'- cGCGgaCCGCGUCUUCGuGCCGGAcgagcggaacuucaUCgcgCCg -3'
miRNA:   3'- -CGC--GGUGCAGGAGCuUGGUCU--------------AGa--GG- -5'
23750 3' -54.2 NC_005261.1 + 74979 0.67 0.922851
Target:  5'- cGCGcCCGCG-CCg-GGugCAGAUCgCCa -3'
miRNA:   3'- -CGC-GGUGCaGGagCUugGUCUAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 75667 0.66 0.962916
Target:  5'- gGCGCgCGCGcagaaccucuUCCUCGccgagGACCAGAg--CCu -3'
miRNA:   3'- -CGCG-GUGC----------AGGAGC-----UUGGUCUagaGG- -5'
23750 3' -54.2 NC_005261.1 + 77609 0.66 0.943016
Target:  5'- cCGCCGgGg-CUCGAgaGCCAGAUCauggCCc -3'
miRNA:   3'- cGCGGUgCagGAGCU--UGGUCUAGa---GG- -5'
23750 3' -54.2 NC_005261.1 + 78630 0.7 0.803929
Target:  5'- gGCGCCAgGUCCgccgaguucgcgCGAGCgAGccCUCCc -3'
miRNA:   3'- -CGCGGUgCAGGa-----------GCUUGgUCuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 80244 0.67 0.938335
Target:  5'- -gGCCACGacgaagCCgccgCGcGCCAGGuacgUCUCCa -3'
miRNA:   3'- cgCGGUGCa-----GGa---GCuUGGUCU----AGAGG- -5'
23750 3' -54.2 NC_005261.1 + 80977 0.67 0.917208
Target:  5'- aGCGCCAC-UUCUUGuccACCAGGUC-Cg -3'
miRNA:   3'- -CGCGGUGcAGGAGCu--UGGUCUAGaGg -5'
23750 3' -54.2 NC_005261.1 + 81299 0.66 0.962916
Target:  5'- gGCGCgCACGUCCgugcCGuuguCgGGGUCgucgCCg -3'
miRNA:   3'- -CGCG-GUGCAGGa---GCuu--GgUCUAGa---GG- -5'
23750 3' -54.2 NC_005261.1 + 85031 0.66 0.951667
Target:  5'- cCGCCGCGcCC-CG-GCCAcGAUCgCCg -3'
miRNA:   3'- cGCGGUGCaGGaGCuUGGU-CUAGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.