miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23750 3' -54.2 NC_005261.1 + 136653 0.67 0.917208
Target:  5'- cCGCCugGagCUCGAugaGGAUCUCg -3'
miRNA:   3'- cGCGGugCagGAGCUuggUCUAGAGg -5'
23750 3' -54.2 NC_005261.1 + 133659 0.66 0.944822
Target:  5'- aGCGCUGCGUgCUCGccuCCGGcgccaacggcucgCUCCg -3'
miRNA:   3'- -CGCGGUGCAgGAGCuu-GGUCua-----------GAGG- -5'
23750 3' -54.2 NC_005261.1 + 131694 0.66 0.947459
Target:  5'- cGCGCgGCGcuggaccgCCUCGAgaGCCAGGcggcgcgCUUCg -3'
miRNA:   3'- -CGCGgUGCa-------GGAGCU--UGGUCUa------GAGG- -5'
23750 3' -54.2 NC_005261.1 + 131450 0.69 0.863626
Target:  5'- uGCGCCGCG-CCUCGcgggcGCCucccgcCUCCg -3'
miRNA:   3'- -CGCGGUGCaGGAGCu----UGGucua--GAGG- -5'
23750 3' -54.2 NC_005261.1 + 129683 0.69 0.839932
Target:  5'- gGCGUCGCGa-CUCGGGCCGGGg--CCg -3'
miRNA:   3'- -CGCGGUGCagGAGCUUGGUCUagaGG- -5'
23750 3' -54.2 NC_005261.1 + 126810 0.68 0.88543
Target:  5'- aGCGCgGCGUCUgCGua-CAGGUCUgCg -3'
miRNA:   3'- -CGCGgUGCAGGaGCuugGUCUAGAgG- -5'
23750 3' -54.2 NC_005261.1 + 126536 0.66 0.962916
Target:  5'- cCGCCGCG-CCUCG-GCCAcGcgCcgCCg -3'
miRNA:   3'- cGCGGUGCaGGAGCuUGGU-CuaGa-GG- -5'
23750 3' -54.2 NC_005261.1 + 126260 0.68 0.898844
Target:  5'- cCGCCGCGUCCaaGAaGCCGuc-CUCCa -3'
miRNA:   3'- cGCGGUGCAGGagCU-UGGUcuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 123464 0.66 0.959391
Target:  5'- cCGUCGCGggCCUC---CCAGAaCUCCa -3'
miRNA:   3'- cGCGGUGCa-GGAGcuuGGUCUaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 122880 0.69 0.84803
Target:  5'- uCGCCGaGUCCgacaGAACCAGcgcCUCCg -3'
miRNA:   3'- cGCGGUgCAGGag--CUUGGUCua-GAGG- -5'
23750 3' -54.2 NC_005261.1 + 122787 0.67 0.938335
Target:  5'- cGCGCCagacgGCGUCCUUagaGAGCCGcGcgC-CCg -3'
miRNA:   3'- -CGCGG-----UGCAGGAG---CUUGGU-CuaGaGG- -5'
23750 3' -54.2 NC_005261.1 + 121930 0.66 0.954475
Target:  5'- cCGCCACGcUCUUCagcagcgccagcuuGAACCAGcUCgCCg -3'
miRNA:   3'- cGCGGUGC-AGGAG--------------CUUGGUCuAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 121075 0.66 0.951667
Target:  5'- uGCGCgGCG-CCggCGGccGCCAGcgcCUCCa -3'
miRNA:   3'- -CGCGgUGCaGGa-GCU--UGGUCua-GAGG- -5'
23750 3' -54.2 NC_005261.1 + 120601 0.66 0.962916
Target:  5'- uCGCCuGCGgCCUCGGcGCCguGGggCUCCu -3'
miRNA:   3'- cGCGG-UGCaGGAGCU-UGG--UCuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 120538 0.66 0.947459
Target:  5'- cCGCCACGcacgacgCCUCGcccAGCCuGAUCggaagCCc -3'
miRNA:   3'- cGCGGUGCa------GGAGC---UUGGuCUAGa----GG- -5'
23750 3' -54.2 NC_005261.1 + 120378 0.67 0.922851
Target:  5'- gGCGCCGCGcCCUCGcgcaccGAgCAGAgcggcgUCUgCg -3'
miRNA:   3'- -CGCGGUGCaGGAGC------UUgGUCU------AGAgG- -5'
23750 3' -54.2 NC_005261.1 + 120331 0.76 0.51743
Target:  5'- cGCGCUGCGUCCcCGAGCgc-GUCUCCc -3'
miRNA:   3'- -CGCGGUGCAGGaGCUUGgucUAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 117230 0.78 0.397521
Target:  5'- gGCGCCGagucCG-CCUCGggUCGGGUCUCg -3'
miRNA:   3'- -CGCGGU----GCaGGAGCuuGGUCUAGAGg -5'
23750 3' -54.2 NC_005261.1 + 116044 0.67 0.930347
Target:  5'- uGCGCCACGauggCCUUGGcgccccgcguggcgcGCCGG-UCcCCg -3'
miRNA:   3'- -CGCGGUGCa---GGAGCU---------------UGGUCuAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 115925 0.7 0.796738
Target:  5'- cCGCCGCGUCCgcgcgCGGGgCAGGguaCUCg -3'
miRNA:   3'- cGCGGUGCAGGa----GCUUgGUCUa--GAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.