miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23750 3' -54.2 NC_005261.1 + 115750 0.69 0.85593
Target:  5'- cGCGCaCACGUCgUCG-GCCccGUCUCg -3'
miRNA:   3'- -CGCG-GUGCAGgAGCuUGGucUAGAGg -5'
23750 3' -54.2 NC_005261.1 + 115658 0.71 0.768956
Target:  5'- gGCGCCGCGUCUaggaucaugUCGcAGCCcaugaGGAUCaugUCCg -3'
miRNA:   3'- -CGCGGUGCAGG---------AGC-UUGG-----UCUAG---AGG- -5'
23750 3' -54.2 NC_005261.1 + 115428 0.66 0.947025
Target:  5'- gGgGCCGCGgCC-CGAgcucgcgcucgcgGCCGGA-CUCCu -3'
miRNA:   3'- -CgCGGUGCaGGaGCU-------------UGGUCUaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 113683 0.72 0.72032
Target:  5'- cGCGCCcCGUUCgUGGACCAGAg--CCa -3'
miRNA:   3'- -CGCGGuGCAGGaGCUUGGUCUagaGG- -5'
23750 3' -54.2 NC_005261.1 + 111988 0.69 0.85593
Target:  5'- gGCGCUggaGUCCaUGGGCCAGuUCUUCg -3'
miRNA:   3'- -CGCGGug-CAGGaGCUUGGUCuAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 109190 0.67 0.938335
Target:  5'- aGCGCCGCGUCgggCGuGCgCAGGcgCUCg -3'
miRNA:   3'- -CGCGGUGCAGga-GCuUG-GUCUa-GAGg -5'
23750 3' -54.2 NC_005261.1 + 109070 0.68 0.903319
Target:  5'- -aGCgGCG-CCUCGGcgaucaugccguugGCCAGGUC-CCg -3'
miRNA:   3'- cgCGgUGCaGGAGCU--------------UGGUCUAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 108948 0.88 0.108846
Target:  5'- aCGCCGCGUCCUCGcGCgcgUAGAUCUCCa -3'
miRNA:   3'- cGCGGUGCAGGAGCuUG---GUCUAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 108669 0.73 0.649278
Target:  5'- gGCGUCGCGUCCUCGucguCCGG--CUCg -3'
miRNA:   3'- -CGCGGUGCAGGAGCuu--GGUCuaGAGg -5'
23750 3' -54.2 NC_005261.1 + 108440 0.68 0.910723
Target:  5'- cGCGUCccggccgagcagcGCGUCgUCGGcgaGGAUCUCCg -3'
miRNA:   3'- -CGCGG-------------UGCAGgAGCUuggUCUAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 107906 0.69 0.863626
Target:  5'- cGCgGCCGCGgCCUCGGccacgagugccGCgCGGAUCgCCg -3'
miRNA:   3'- -CG-CGGUGCaGGAGCU-----------UG-GUCUAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 107382 0.72 0.72032
Target:  5'- gGCGcCCGCGUCCaCGAacgGCCAGAgC-CCg -3'
miRNA:   3'- -CGC-GGUGCAGGaGCU---UGGUCUaGaGG- -5'
23750 3' -54.2 NC_005261.1 + 107015 0.68 0.905202
Target:  5'- aGCGCCACGUgCCcaaGGAgCAGggCgcgCCa -3'
miRNA:   3'- -CGCGGUGCA-GGag-CUUgGUCuaGa--GG- -5'
23750 3' -54.2 NC_005261.1 + 106983 0.74 0.61845
Target:  5'- cGCGCCGCGcaccgCgUCG-GCCAGGUCcgCCg -3'
miRNA:   3'- -CGCGGUGCa----GgAGCuUGGUCUAGa-GG- -5'
23750 3' -54.2 NC_005261.1 + 106939 0.66 0.947459
Target:  5'- aGCGaCACGcgcaCCUCGGcCCGGGcgcgCUCCg -3'
miRNA:   3'- -CGCgGUGCa---GGAGCUuGGUCUa---GAGG- -5'
23750 3' -54.2 NC_005261.1 + 106591 0.66 0.955643
Target:  5'- cGCGCgGCGcUCCUCcuGGACCucGUC-CCa -3'
miRNA:   3'- -CGCGgUGC-AGGAG--CUUGGucUAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 106549 0.69 0.839932
Target:  5'- gGCgGCCGCGUCC--GGGCCGGcgCgcgCCg -3'
miRNA:   3'- -CG-CGGUGCAGGagCUUGGUCuaGa--GG- -5'
23750 3' -54.2 NC_005261.1 + 106453 0.73 0.659537
Target:  5'- -gGCCACGUCCgcgCGGgcguccaagagcGCCGGG-CUCCc -3'
miRNA:   3'- cgCGGUGCAGGa--GCU------------UGGUCUaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 106295 0.68 0.892252
Target:  5'- aCGCCGuCGaCCUCGGcgAgCAGGUCUuCCg -3'
miRNA:   3'- cGCGGU-GCaGGAGCU--UgGUCUAGA-GG- -5'
23750 3' -54.2 NC_005261.1 + 104266 0.66 0.959391
Target:  5'- aGCGCCGCGgUCUCGGcggcuGCgCGGGcCUCg -3'
miRNA:   3'- -CGCGGUGCaGGAGCU-----UG-GUCUaGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.