miRNA display CGI


Results 41 - 60 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23750 3' -54.2 NC_005261.1 + 104176 0.67 0.938335
Target:  5'- gGCGCCGCGcgcgggUCgUCGGGCgGGAcggCgUCCa -3'
miRNA:   3'- -CGCGGUGC------AGgAGCUUGgUCUa--G-AGG- -5'
23750 3' -54.2 NC_005261.1 + 104132 0.77 0.43256
Target:  5'- uCGCCGCGagCUCGGccGCCAGGUCggCCa -3'
miRNA:   3'- cGCGGUGCagGAGCU--UGGUCUAGa-GG- -5'
23750 3' -54.2 NC_005261.1 + 103461 0.66 0.951667
Target:  5'- cCGCCGCG-CC-CGucGCCAGggCgUCCa -3'
miRNA:   3'- cGCGGUGCaGGaGCu-UGGUCuaG-AGG- -5'
23750 3' -54.2 NC_005261.1 + 103391 0.69 0.84803
Target:  5'- cGCGCCGCGgccgCCUgCGccuCCAG--CUCCg -3'
miRNA:   3'- -CGCGGUGCa---GGA-GCuu-GGUCuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 103252 0.68 0.911324
Target:  5'- cGCGcCCGCGUCCgCGca-CAGccgCUCCa -3'
miRNA:   3'- -CGC-GGUGCAGGaGCuugGUCua-GAGG- -5'
23750 3' -54.2 NC_005261.1 + 102845 0.71 0.759438
Target:  5'- cGCGCCACGUgCU-GGGCCAGcagcgCgUCCa -3'
miRNA:   3'- -CGCGGUGCAgGAgCUUGGUCua---G-AGG- -5'
23750 3' -54.2 NC_005261.1 + 102718 0.7 0.814525
Target:  5'- nCGCCGCGUCCgCGcccgccGCCAGGgcguUCUUCa -3'
miRNA:   3'- cGCGGUGCAGGaGCu-----UGGUCU----AGAGG- -5'
23750 3' -54.2 NC_005261.1 + 102681 0.77 0.43256
Target:  5'- aGCGCCGCGUCCgccgCGGccgucgcuGCCGccGUCUCCg -3'
miRNA:   3'- -CGCGGUGCAGGa---GCU--------UGGUc-UAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 102602 0.72 0.690148
Target:  5'- cGCGCCuuccGCGUCCUCGccGCCAGcggcCUCg -3'
miRNA:   3'- -CGCGG----UGCAGGAGCu-UGGUCua--GAGg -5'
23750 3' -54.2 NC_005261.1 + 102448 0.76 0.469335
Target:  5'- cGCGCCGCccggCCUCGGcgcgcaggcGCCGGAcCUCCu -3'
miRNA:   3'- -CGCGGUGca--GGAGCU---------UGGUCUaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 102387 0.79 0.356371
Target:  5'- aGCGCgGCGcgcagcUCCUCGcGCCAGcgCUCCu -3'
miRNA:   3'- -CGCGgUGC------AGGAGCuUGGUCuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 102315 0.67 0.938335
Target:  5'- cGCGCCGCGgCCgCGGcgcgcagccgcGCCAGcUCggCCg -3'
miRNA:   3'- -CGCGGUGCaGGaGCU-----------UGGUCuAGa-GG- -5'
23750 3' -54.2 NC_005261.1 + 101941 0.69 0.878382
Target:  5'- aCGCCACGUaCUuggCGAGCCGGggCacggCCg -3'
miRNA:   3'- cGCGGUGCA-GGa--GCUUGGUCuaGa---GG- -5'
23750 3' -54.2 NC_005261.1 + 101364 0.66 0.959391
Target:  5'- cGCgGCCACGUCCa-GcuCCGGcgcCUCCu -3'
miRNA:   3'- -CG-CGGUGCAGGagCuuGGUCua-GAGG- -5'
23750 3' -54.2 NC_005261.1 + 100602 0.66 0.943016
Target:  5'- cCGCCACGcggCCgcgcaGGugCAGGUC-CCg -3'
miRNA:   3'- cGCGGUGCa--GGag---CUugGUCUAGaGG- -5'
23750 3' -54.2 NC_005261.1 + 100312 0.66 0.947459
Target:  5'- cGCGUCGCGgg--CGcGCUcGAUCUCCa -3'
miRNA:   3'- -CGCGGUGCaggaGCuUGGuCUAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 100081 0.66 0.959391
Target:  5'- cGCGCCGCGccCCUCGccGCCGccgCUgCCg -3'
miRNA:   3'- -CGCGGUGCa-GGAGCu-UGGUcuaGA-GG- -5'
23750 3' -54.2 NC_005261.1 + 99499 0.66 0.951667
Target:  5'- cCGCCGCGUCCUCcgaGGGCCcg--C-CCg -3'
miRNA:   3'- cGCGGUGCAGGAG---CUUGGucuaGaGG- -5'
23750 3' -54.2 NC_005261.1 + 97423 0.67 0.933414
Target:  5'- cGCGCCGggccUGcCCUUGGGCgCGGGUCUg- -3'
miRNA:   3'- -CGCGGU----GCaGGAGCUUG-GUCUAGAgg -5'
23750 3' -54.2 NC_005261.1 + 96893 0.69 0.863626
Target:  5'- cGCGCCucgGCGUCCgcc-AgCAGAUCUCg -3'
miRNA:   3'- -CGCGG---UGCAGGagcuUgGUCUAGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.