miRNA display CGI


Results 41 - 60 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23750 3' -54.2 NC_005261.1 + 102681 0.77 0.43256
Target:  5'- aGCGCCGCGUCCgccgCGGccgucgcuGCCGccGUCUCCg -3'
miRNA:   3'- -CGCGGUGCAGGa---GCU--------UGGUc-UAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 117230 0.78 0.397521
Target:  5'- gGCGCCGagucCG-CCUCGggUCGGGUCUCg -3'
miRNA:   3'- -CGCGGU----GCaGGAGCuuGGUCUAGAGg -5'
23750 3' -54.2 NC_005261.1 + 102387 0.79 0.356371
Target:  5'- aGCGCgGCGcgcagcUCCUCGcGCCAGcgCUCCu -3'
miRNA:   3'- -CGCGgUGC------AGGAGCuUGGUCuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 58821 0.85 0.16033
Target:  5'- cGCGCCACGUCCUCcaGGcacccgcGCUGGGUCUCCc -3'
miRNA:   3'- -CGCGGUGCAGGAG--CU-------UGGUCUAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 49311 0.88 0.11
Target:  5'- aGCGCCGCGcagcCCUCGAGCCGGAacucgacgcgguuguUCUCCa -3'
miRNA:   3'- -CGCGGUGCa---GGAGCUUGGUCU---------------AGAGG- -5'
23750 3' -54.2 NC_005261.1 + 70913 0.74 0.587714
Target:  5'- cGCGCCACGUCC-CGcGCgAG--CUCCa -3'
miRNA:   3'- -CGCGGUGCAGGaGCuUGgUCuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 59627 0.74 0.588735
Target:  5'- aGCGCCAggaccucgcggucgcUGUCCUCGAggcgggcgacugcgGCCGGGUCgucgaagCCg -3'
miRNA:   3'- -CGCGGU---------------GCAGGAGCU--------------UGGUCUAGa------GG- -5'
23750 3' -54.2 NC_005261.1 + 95938 0.72 0.710327
Target:  5'- aGCGCCAUGUCCgCGcccGCCGGgAUCgaccCCa -3'
miRNA:   3'- -CGCGGUGCAGGaGCu--UGGUC-UAGa---GG- -5'
23750 3' -54.2 NC_005261.1 + 74476 0.72 0.710327
Target:  5'- gGCGCgGCGUgCCU-GGGCgGGAUCUCg -3'
miRNA:   3'- -CGCGgUGCA-GGAgCUUGgUCUAGAGg -5'
23750 3' -54.2 NC_005261.1 + 652 0.72 0.710327
Target:  5'- aGCGCCGCGUCCcCGGcgccgaguccugGCCcuccgcGGAcgCUCCg -3'
miRNA:   3'- -CGCGGUGCAGGaGCU------------UGG------UCUa-GAGG- -5'
23750 3' -54.2 NC_005261.1 + 57305 0.72 0.700266
Target:  5'- cGCGCgACGUCCUCGu-CCAuGA-CUCg -3'
miRNA:   3'- -CGCGgUGCAGGAGCuuGGU-CUaGAGg -5'
23750 3' -54.2 NC_005261.1 + 102602 0.72 0.690148
Target:  5'- cGCGCCuuccGCGUCCUCGccGCCAGcggcCUCg -3'
miRNA:   3'- -CGCGG----UGCAGGAGCu-UGGUCua--GAGg -5'
23750 3' -54.2 NC_005261.1 + 39220 0.72 0.690148
Target:  5'- cCGCCAUGgcCCUCGcgcgcgccGGCgAGGUCUCCg -3'
miRNA:   3'- cGCGGUGCa-GGAGC--------UUGgUCUAGAGG- -5'
23750 3' -54.2 NC_005261.1 + 32611 0.72 0.689133
Target:  5'- uCGuCCGCGUCCUCGGacgacgaGCCGGG-CUCg -3'
miRNA:   3'- cGC-GGUGCAGGAGCU-------UGGUCUaGAGg -5'
23750 3' -54.2 NC_005261.1 + 70662 0.73 0.669775
Target:  5'- gGCGCCGCGgCCgCGGGCCGcacCUCCa -3'
miRNA:   3'- -CGCGGUGCaGGaGCUUGGUcuaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 106453 0.73 0.659537
Target:  5'- -gGCCACGUCCgcgCGGgcguccaagagcGCCGGG-CUCCc -3'
miRNA:   3'- cgCGGUGCAGGa--GCU------------UGGUCUaGAGG- -5'
23750 3' -54.2 NC_005261.1 + 108669 0.73 0.649278
Target:  5'- gGCGUCGCGUCCUCGucguCCGG--CUCg -3'
miRNA:   3'- -CGCGGUGCAGGAGCuu--GGUCuaGAGg -5'
23750 3' -54.2 NC_005261.1 + 5164 0.73 0.639004
Target:  5'- cGgGCCGCGUCgagcaGGGCCGGGUcCUCCu -3'
miRNA:   3'- -CgCGGUGCAGgag--CUUGGUCUA-GAGG- -5'
23750 3' -54.2 NC_005261.1 + 106983 0.74 0.61845
Target:  5'- cGCGCCGCGcaccgCgUCG-GCCAGGUCcgCCg -3'
miRNA:   3'- -CGCGGUGCa----GgAGCuUGGUCUAGa-GG- -5'
23750 3' -54.2 NC_005261.1 + 61954 0.74 0.608184
Target:  5'- cGCGCCgaccGCGUCCcCcAGCCGGGUCgCCg -3'
miRNA:   3'- -CGCGG----UGCAGGaGcUUGGUCUAGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.