miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23751 3' -55.2 NC_005261.1 + 114328 0.66 0.914635
Target:  5'- -cGGCGCaaGGUGGACuG-GCuCGAGCGg -3'
miRNA:   3'- gaCUGCGa-CCACCUG-CaCGuGUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 69489 0.66 0.914635
Target:  5'- -cGAUGCUGGUGcACcUGUACGccGGCGg -3'
miRNA:   3'- gaCUGCGACCACcUGcACGUGU--UCGU- -5'
23751 3' -55.2 NC_005261.1 + 43647 0.66 0.914635
Target:  5'- gUGGCGCggcGGU-GACGUGCucuuCGAGUc -3'
miRNA:   3'- gACUGCGa--CCAcCUGCACGu---GUUCGu -5'
23751 3' -55.2 NC_005261.1 + 36916 0.66 0.907932
Target:  5'- --cGCGCUGGgccgGGACGUacuccggggcccuGCGCuGGCGc -3'
miRNA:   3'- gacUGCGACCa---CCUGCA-------------CGUGuUCGU- -5'
23751 3' -55.2 NC_005261.1 + 75573 0.66 0.902228
Target:  5'- -gGGCGCUGGgcgGcGGCGcgGCGCucGCGc -3'
miRNA:   3'- gaCUGCGACCa--C-CUGCa-CGUGuuCGU- -5'
23751 3' -55.2 NC_005261.1 + 67102 0.66 0.895659
Target:  5'- -cGACGC-GGUgcGGGCG-GCGCGcGCAg -3'
miRNA:   3'- gaCUGCGaCCA--CCUGCaCGUGUuCGU- -5'
23751 3' -55.2 NC_005261.1 + 122127 0.66 0.888852
Target:  5'- uUGAgcagguacUGCaGGUGGugGUGCAC-GGCc -3'
miRNA:   3'- gACU--------GCGaCCACCugCACGUGuUCGu -5'
23751 3' -55.2 NC_005261.1 + 91020 0.66 0.888852
Target:  5'- -aGAUGCUGaugaagggcGUGGACcugGUGCGCAAGa- -3'
miRNA:   3'- gaCUGCGAC---------CACCUG---CACGUGUUCgu -5'
23751 3' -55.2 NC_005261.1 + 132625 0.67 0.881809
Target:  5'- -gGGCGCUGGcgccgaGGACGcggGCGC-GGCGg -3'
miRNA:   3'- gaCUGCGACCa-----CCUGCa--CGUGuUCGU- -5'
23751 3' -55.2 NC_005261.1 + 135864 0.67 0.881809
Target:  5'- -cGACGCcu-UGGACacGCACAAGCAg -3'
miRNA:   3'- gaCUGCGaccACCUGcaCGUGUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 3839 0.67 0.874536
Target:  5'- -gGGCGCUGGcGGcaGCG-GCGCcGGCGc -3'
miRNA:   3'- gaCUGCGACCaCC--UGCaCGUGuUCGU- -5'
23751 3' -55.2 NC_005261.1 + 120426 0.67 0.874536
Target:  5'- cCUGG-GCUGGUGaacaugcgcGGCGUGCGCcuGCu -3'
miRNA:   3'- -GACUgCGACCAC---------CUGCACGUGuuCGu -5'
23751 3' -55.2 NC_005261.1 + 37809 0.67 0.874536
Target:  5'- -cGACGCUGGaGGACcaGCGCGccgucaccuggAGCGc -3'
miRNA:   3'- gaCUGCGACCaCCUGcaCGUGU-----------UCGU- -5'
23751 3' -55.2 NC_005261.1 + 118802 0.67 0.859319
Target:  5'- aUGGCGCacGUGGGCGUcuGCGCccuGGGCGc -3'
miRNA:   3'- gACUGCGacCACCUGCA--CGUG---UUCGU- -5'
23751 3' -55.2 NC_005261.1 + 75876 0.67 0.84325
Target:  5'- -cGGCGCc-GUGGGCGcGCGCAgcGGCGa -3'
miRNA:   3'- gaCUGCGacCACCUGCaCGUGU--UCGU- -5'
23751 3' -55.2 NC_005261.1 + 30137 0.67 0.84325
Target:  5'- -cGACGC-GGUGGAgCGcGCGCGccuuAGCGg -3'
miRNA:   3'- gaCUGCGaCCACCU-GCaCGUGU----UCGU- -5'
23751 3' -55.2 NC_005261.1 + 88622 0.68 0.834913
Target:  5'- gUGACGCUGcUGGGCaUGUcggaggacgGCAAGCGc -3'
miRNA:   3'- gACUGCGACcACCUGcACG---------UGUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 6099 0.68 0.826384
Target:  5'- -gGugGC-GGUGGAUGaaagGCGCAcacGGCAa -3'
miRNA:   3'- gaCugCGaCCACCUGCa---CGUGU---UCGU- -5'
23751 3' -55.2 NC_005261.1 + 69304 0.68 0.817671
Target:  5'- -gGGCGCcGGUGG-CG-GCGgGAGCGg -3'
miRNA:   3'- gaCUGCGaCCACCuGCaCGUgUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 61574 0.68 0.817671
Target:  5'- gUGGCGCUGGUgauGGcCGUGUucgUggGCAg -3'
miRNA:   3'- gACUGCGACCA---CCuGCACGu--GuuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.