Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23751 | 3' | -55.2 | NC_005261.1 | + | 132625 | 0.67 | 0.881809 |
Target: 5'- -gGGCGCUGGcgccgaGGACGcggGCGC-GGCGg -3' miRNA: 3'- gaCUGCGACCa-----CCUGCa--CGUGuUCGU- -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 133621 | 0.7 | 0.706176 |
Target: 5'- gCUGGCGCU-GUGGGcCGcgcucgccgcgccgcUGCGCGAGCGc -3' miRNA: 3'- -GACUGCGAcCACCU-GC---------------ACGUGUUCGU- -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 134891 | 0.72 | 0.608643 |
Target: 5'- gCUGuGCGUucggUGGUGGAgcggGUGCGCAAGCGc -3' miRNA: 3'- -GAC-UGCG----ACCACCUg---CACGUGUUCGU- -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 135864 | 0.67 | 0.881809 |
Target: 5'- -cGACGCcu-UGGACacGCACAAGCAg -3' miRNA: 3'- gaCUGCGaccACCUGcaCGUGUUCGU- -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 136572 | 0.73 | 0.526541 |
Target: 5'- -aGGCGCgGGUGGGCGgGCGCAgagacgcccGGCGc -3' miRNA: 3'- gaCUGCGaCCACCUGCaCGUGU---------UCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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