miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23751 3' -55.2 NC_005261.1 + 136572 0.73 0.526541
Target:  5'- -aGGCGCgGGUGGGCGgGCGCAgagacgcccGGCGc -3'
miRNA:   3'- gaCUGCGaCCACCUGCaCGUGU---------UCGU- -5'
23751 3' -55.2 NC_005261.1 + 135864 0.67 0.881809
Target:  5'- -cGACGCcu-UGGACacGCACAAGCAg -3'
miRNA:   3'- gaCUGCGaccACCUGcaCGUGUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 134891 0.72 0.608643
Target:  5'- gCUGuGCGUucggUGGUGGAgcggGUGCGCAAGCGc -3'
miRNA:   3'- -GAC-UGCG----ACCACCUg---CACGUGUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 133621 0.7 0.706176
Target:  5'- gCUGGCGCU-GUGGGcCGcgcucgccgcgccgcUGCGCGAGCGc -3'
miRNA:   3'- -GACUGCGAcCACCU-GC---------------ACGUGUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 132625 0.67 0.881809
Target:  5'- -gGGCGCUGGcgccgaGGACGcggGCGC-GGCGg -3'
miRNA:   3'- gaCUGCGACCa-----CCUGCa--CGUGuUCGU- -5'
23751 3' -55.2 NC_005261.1 + 132514 0.72 0.608643
Target:  5'- -cGACGCgGGcugGGACGaGUACGAGCGc -3'
miRNA:   3'- gaCUGCGaCCa--CCUGCaCGUGUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 122127 0.66 0.888852
Target:  5'- uUGAgcagguacUGCaGGUGGugGUGCAC-GGCc -3'
miRNA:   3'- gACU--------GCGaCCACCugCACGUGuUCGu -5'
23751 3' -55.2 NC_005261.1 + 120426 0.67 0.874536
Target:  5'- cCUGG-GCUGGUGaacaugcgcGGCGUGCGCcuGCu -3'
miRNA:   3'- -GACUgCGACCAC---------CUGCACGUGuuCGu -5'
23751 3' -55.2 NC_005261.1 + 118802 0.67 0.859319
Target:  5'- aUGGCGCacGUGGGCGUcuGCGCccuGGGCGc -3'
miRNA:   3'- gACUGCGacCACCUGCA--CGUG---UUCGU- -5'
23751 3' -55.2 NC_005261.1 + 114328 0.66 0.914635
Target:  5'- -cGGCGCaaGGUGGACuG-GCuCGAGCGg -3'
miRNA:   3'- gaCUGCGa-CCACCUG-CaCGuGUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 114273 0.71 0.66077
Target:  5'- -cGACGC-GGUGG-CGcGCGCGGGCu -3'
miRNA:   3'- gaCUGCGaCCACCuGCaCGUGUUCGu -5'
23751 3' -55.2 NC_005261.1 + 109190 0.72 0.619065
Target:  5'- --aGCGCcGcGUcGGGCGUGCGCAGGCGc -3'
miRNA:   3'- gacUGCGaC-CA-CCUGCACGUGUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 104661 0.73 0.536616
Target:  5'- --cGCGCUGGcGGGCGUGUGCugcGGCAg -3'
miRNA:   3'- gacUGCGACCaCCUGCACGUGu--UCGU- -5'
23751 3' -55.2 NC_005261.1 + 98349 0.68 0.808784
Target:  5'- -cGACGCgGGggcgggGGugG-GCGCGGGCu -3'
miRNA:   3'- gaCUGCGaCCa-----CCugCaCGUGUUCGu -5'
23751 3' -55.2 NC_005261.1 + 98118 0.69 0.771659
Target:  5'- -cGAgGCUGG-GGACGccgcgGCACcGGCGg -3'
miRNA:   3'- gaCUgCGACCaCCUGCa----CGUGuUCGU- -5'
23751 3' -55.2 NC_005261.1 + 95673 0.76 0.369758
Target:  5'- -gGGCGCgGGUGuGAgcaCGUGCACGAGCGc -3'
miRNA:   3'- gaCUGCGaCCAC-CU---GCACGUGUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 94686 0.69 0.76203
Target:  5'- -aGGCGCUGGccaccgaGGACGUggccgaGCugGAGCGc -3'
miRNA:   3'- gaCUGCGACCa------CCUGCA------CGugUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 91085 0.68 0.79973
Target:  5'- -cGGCGcCUGGUcGACGUGCuCAuGCAc -3'
miRNA:   3'- gaCUGC-GACCAcCUGCACGuGUuCGU- -5'
23751 3' -55.2 NC_005261.1 + 91020 0.66 0.888852
Target:  5'- -aGAUGCUGaugaagggcGUGGACcugGUGCGCAAGa- -3'
miRNA:   3'- gaCUGCGAC---------CACCUG---CACGUGUUCgu -5'
23751 3' -55.2 NC_005261.1 + 88622 0.68 0.834913
Target:  5'- gUGACGCUGcUGGGCaUGUcggaggacgGCAAGCGc -3'
miRNA:   3'- gACUGCGACcACCUGcACG---------UGUUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.