miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23751 3' -55.2 NC_005261.1 + 76171 0.69 0.780214
Target:  5'- gUGGCGCUgcaguacgagcggGGccUGGGCGUGCugAuGCAg -3'
miRNA:   3'- gACUGCGA-------------CC--ACCUGCACGugUuCGU- -5'
23751 3' -55.2 NC_005261.1 + 75876 0.67 0.84325
Target:  5'- -cGGCGCc-GUGGGCGcGCGCAgcGGCGa -3'
miRNA:   3'- gaCUGCGacCACCUGCaCGUGU--UCGU- -5'
23751 3' -55.2 NC_005261.1 + 75573 0.66 0.902228
Target:  5'- -gGGCGCUGGgcgGcGGCGcgGCGCucGCGc -3'
miRNA:   3'- gaCUGCGACCa--C-CUGCa-CGUGuuCGU- -5'
23751 3' -55.2 NC_005261.1 + 73776 0.76 0.369758
Target:  5'- -aGGCGCUGGccUGcGACGUGCGCGcGGCGg -3'
miRNA:   3'- gaCUGCGACC--AC-CUGCACGUGU-UCGU- -5'
23751 3' -55.2 NC_005261.1 + 73671 0.7 0.732466
Target:  5'- -cGACGC-GGaGGGCGgGCGCGGGCu -3'
miRNA:   3'- gaCUGCGaCCaCCUGCaCGUGUUCGu -5'
23751 3' -55.2 NC_005261.1 + 73225 0.73 0.526541
Target:  5'- -gGGCGC-GGUGGccGCGaGCGCGAGCAg -3'
miRNA:   3'- gaCUGCGaCCACC--UGCaCGUGUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 69489 0.66 0.914635
Target:  5'- -cGAUGCUGGUGcACcUGUACGccGGCGg -3'
miRNA:   3'- gaCUGCGACCACcUGcACGUGU--UCGU- -5'
23751 3' -55.2 NC_005261.1 + 69304 0.68 0.817671
Target:  5'- -gGGCGCcGGUGG-CG-GCGgGAGCGg -3'
miRNA:   3'- gaCUGCGaCCACCuGCaCGUgUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 67102 0.66 0.895659
Target:  5'- -cGACGC-GGUgcGGGCG-GCGCGcGCAg -3'
miRNA:   3'- gaCUGCGaCCA--CCUGCaCGUGUuCGU- -5'
23751 3' -55.2 NC_005261.1 + 61574 0.68 0.817671
Target:  5'- gUGGCGCUGGUgauGGcCGUGUucgUggGCAg -3'
miRNA:   3'- gACUGCGACCA---CCuGCACGu--GuuCGU- -5'
23751 3' -55.2 NC_005261.1 + 44947 0.68 0.796063
Target:  5'- -cGGCGCUGGagagccugcugcgGGACGcGCGCGAGg- -3'
miRNA:   3'- gaCUGCGACCa------------CCUGCaCGUGUUCgu -5'
23751 3' -55.2 NC_005261.1 + 43647 0.66 0.914635
Target:  5'- gUGGCGCggcGGU-GACGUGCucuuCGAGUc -3'
miRNA:   3'- gACUGCGa--CCAcCUGCACGu---GUUCGu -5'
23751 3' -55.2 NC_005261.1 + 37870 0.72 0.59824
Target:  5'- -cGACGcCUGGcGGcGCGUGCugGAGCc -3'
miRNA:   3'- gaCUGC-GACCaCC-UGCACGugUUCGu -5'
23751 3' -55.2 NC_005261.1 + 37809 0.67 0.874536
Target:  5'- -cGACGCUGGaGGACcaGCGCGccgucaccuggAGCGc -3'
miRNA:   3'- gaCUGCGACCaCCUGcaCGUGU-----------UCGU- -5'
23751 3' -55.2 NC_005261.1 + 36916 0.66 0.907932
Target:  5'- --cGCGCUGGgccgGGACGUacuccggggcccuGCGCuGGCGc -3'
miRNA:   3'- gacUGCGACCa---CCUGCA-------------CGUGuUCGU- -5'
23751 3' -55.2 NC_005261.1 + 33064 0.68 0.808784
Target:  5'- -cGGCGCcGG-GGACGcgGCGCuGGCGg -3'
miRNA:   3'- gaCUGCGaCCaCCUGCa-CGUGuUCGU- -5'
23751 3' -55.2 NC_005261.1 + 32372 0.73 0.546758
Target:  5'- -aGACGCUGGUGcaGGCGcgGCGCGgcGGCGu -3'
miRNA:   3'- gaCUGCGACCAC--CUGCa-CGUGU--UCGU- -5'
23751 3' -55.2 NC_005261.1 + 30784 0.7 0.732466
Target:  5'- -cGGcCGCggcGGUGGAgGUGCugGGGCc -3'
miRNA:   3'- gaCU-GCGa--CCACCUgCACGugUUCGu -5'
23751 3' -55.2 NC_005261.1 + 30137 0.67 0.84325
Target:  5'- -cGACGC-GGUGGAgCGcGCGCGccuuAGCGg -3'
miRNA:   3'- gaCUGCGaCCACCU-GCaCGUGU----UCGU- -5'
23751 3' -55.2 NC_005261.1 + 29483 0.79 0.260423
Target:  5'- -cGGCGCUGGUGGACcugGUGUACGcGCGc -3'
miRNA:   3'- gaCUGCGACCACCUG---CACGUGUuCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.