Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23751 | 3' | -55.2 | NC_005261.1 | + | 76171 | 0.69 | 0.780214 |
Target: 5'- gUGGCGCUgcaguacgagcggGGccUGGGCGUGCugAuGCAg -3' miRNA: 3'- gACUGCGA-------------CC--ACCUGCACGugUuCGU- -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 75876 | 0.67 | 0.84325 |
Target: 5'- -cGGCGCc-GUGGGCGcGCGCAgcGGCGa -3' miRNA: 3'- gaCUGCGacCACCUGCaCGUGU--UCGU- -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 75573 | 0.66 | 0.902228 |
Target: 5'- -gGGCGCUGGgcgGcGGCGcgGCGCucGCGc -3' miRNA: 3'- gaCUGCGACCa--C-CUGCa-CGUGuuCGU- -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 73776 | 0.76 | 0.369758 |
Target: 5'- -aGGCGCUGGccUGcGACGUGCGCGcGGCGg -3' miRNA: 3'- gaCUGCGACC--AC-CUGCACGUGU-UCGU- -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 73671 | 0.7 | 0.732466 |
Target: 5'- -cGACGC-GGaGGGCGgGCGCGGGCu -3' miRNA: 3'- gaCUGCGaCCaCCUGCaCGUGUUCGu -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 73225 | 0.73 | 0.526541 |
Target: 5'- -gGGCGC-GGUGGccGCGaGCGCGAGCAg -3' miRNA: 3'- gaCUGCGaCCACC--UGCaCGUGUUCGU- -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 69489 | 0.66 | 0.914635 |
Target: 5'- -cGAUGCUGGUGcACcUGUACGccGGCGg -3' miRNA: 3'- gaCUGCGACCACcUGcACGUGU--UCGU- -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 69304 | 0.68 | 0.817671 |
Target: 5'- -gGGCGCcGGUGG-CG-GCGgGAGCGg -3' miRNA: 3'- gaCUGCGaCCACCuGCaCGUgUUCGU- -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 67102 | 0.66 | 0.895659 |
Target: 5'- -cGACGC-GGUgcGGGCG-GCGCGcGCAg -3' miRNA: 3'- gaCUGCGaCCA--CCUGCaCGUGUuCGU- -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 61574 | 0.68 | 0.817671 |
Target: 5'- gUGGCGCUGGUgauGGcCGUGUucgUggGCAg -3' miRNA: 3'- gACUGCGACCA---CCuGCACGu--GuuCGU- -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 44947 | 0.68 | 0.796063 |
Target: 5'- -cGGCGCUGGagagccugcugcgGGACGcGCGCGAGg- -3' miRNA: 3'- gaCUGCGACCa------------CCUGCaCGUGUUCgu -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 43647 | 0.66 | 0.914635 |
Target: 5'- gUGGCGCggcGGU-GACGUGCucuuCGAGUc -3' miRNA: 3'- gACUGCGa--CCAcCUGCACGu---GUUCGu -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 37870 | 0.72 | 0.59824 |
Target: 5'- -cGACGcCUGGcGGcGCGUGCugGAGCc -3' miRNA: 3'- gaCUGC-GACCaCC-UGCACGugUUCGu -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 37809 | 0.67 | 0.874536 |
Target: 5'- -cGACGCUGGaGGACcaGCGCGccgucaccuggAGCGc -3' miRNA: 3'- gaCUGCGACCaCCUGcaCGUGU-----------UCGU- -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 36916 | 0.66 | 0.907932 |
Target: 5'- --cGCGCUGGgccgGGACGUacuccggggcccuGCGCuGGCGc -3' miRNA: 3'- gacUGCGACCa---CCUGCA-------------CGUGuUCGU- -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 33064 | 0.68 | 0.808784 |
Target: 5'- -cGGCGCcGG-GGACGcgGCGCuGGCGg -3' miRNA: 3'- gaCUGCGaCCaCCUGCa-CGUGuUCGU- -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 32372 | 0.73 | 0.546758 |
Target: 5'- -aGACGCUGGUGcaGGCGcgGCGCGgcGGCGu -3' miRNA: 3'- gaCUGCGACCAC--CUGCa-CGUGU--UCGU- -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 30784 | 0.7 | 0.732466 |
Target: 5'- -cGGcCGCggcGGUGGAgGUGCugGGGCc -3' miRNA: 3'- gaCU-GCGa--CCACCUgCACGugUUCGu -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 30137 | 0.67 | 0.84325 |
Target: 5'- -cGACGC-GGUGGAgCGcGCGCGccuuAGCGg -3' miRNA: 3'- gaCUGCGaCCACCU-GCaCGUGU----UCGU- -5' |
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23751 | 3' | -55.2 | NC_005261.1 | + | 29483 | 0.79 | 0.260423 |
Target: 5'- -cGGCGCUGGUGGACcugGUGUACGcGCGc -3' miRNA: 3'- gaCUGCGACCACCUG---CACGUGUuCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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