miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23751 3' -55.2 NC_005261.1 + 43647 0.66 0.914635
Target:  5'- gUGGCGCggcGGU-GACGUGCucuuCGAGUc -3'
miRNA:   3'- gACUGCGa--CCAcCUGCACGu---GUUCGu -5'
23751 3' -55.2 NC_005261.1 + 114273 0.71 0.66077
Target:  5'- -cGACGC-GGUGG-CGcGCGCGGGCu -3'
miRNA:   3'- gaCUGCGaCCACCuGCaCGUGUUCGu -5'
23751 3' -55.2 NC_005261.1 + 133621 0.7 0.706176
Target:  5'- gCUGGCGCU-GUGGGcCGcgcucgccgcgccgcUGCGCGAGCGc -3'
miRNA:   3'- -GACUGCGAcCACCU-GC---------------ACGUGUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 2555 0.7 0.722417
Target:  5'- -cGGCGCUGGgcgcGGGCGUGUGguacucccCGGGCGg -3'
miRNA:   3'- gaCUGCGACCa---CCUGCACGU--------GUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 30784 0.7 0.732466
Target:  5'- -cGGcCGCggcGGUGGAgGUGCugGGGCc -3'
miRNA:   3'- gaCU-GCGa--CCACCUgCACGugUUCGu -5'
23751 3' -55.2 NC_005261.1 + 73671 0.7 0.732466
Target:  5'- -cGACGC-GGaGGGCGgGCGCGGGCu -3'
miRNA:   3'- gaCUGCGaCCaCCUGCaCGUGUUCGu -5'
23751 3' -55.2 NC_005261.1 + 27243 0.69 0.752282
Target:  5'- -aGGCGcCUGGggugGGGCGgggUGUGCGGGCAg -3'
miRNA:   3'- gaCUGC-GACCa---CCUGC---ACGUGUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 94686 0.69 0.76203
Target:  5'- -aGGCGCUGGccaccgaGGACGUggccgaGCugGAGCGc -3'
miRNA:   3'- gaCUGCGACCa------CCUGCA------CGugUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 98118 0.69 0.771659
Target:  5'- -cGAgGCUGG-GGACGccgcgGCACcGGCGg -3'
miRNA:   3'- gaCUgCGACCaCCUGCa----CGUGuUCGU- -5'
23751 3' -55.2 NC_005261.1 + 109190 0.72 0.619065
Target:  5'- --aGCGCcGcGUcGGGCGUGCGCAGGCGc -3'
miRNA:   3'- gacUGCGaC-CA-CCUGCACGUGUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 132514 0.72 0.608643
Target:  5'- -cGACGCgGGcugGGACGaGUACGAGCGc -3'
miRNA:   3'- gaCUGCGaCCa--CCUGCaCGUGUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 134891 0.72 0.608643
Target:  5'- gCUGuGCGUucggUGGUGGAgcggGUGCGCAAGCGc -3'
miRNA:   3'- -GAC-UGCG----ACCACCUg---CACGUGUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 73776 0.76 0.369758
Target:  5'- -aGGCGCUGGccUGcGACGUGCGCGcGGCGg -3'
miRNA:   3'- gaCUGCGACC--AC-CUGCACGUGU-UCGU- -5'
23751 3' -55.2 NC_005261.1 + 95673 0.76 0.369758
Target:  5'- -gGGCGCgGGUGuGAgcaCGUGCACGAGCGc -3'
miRNA:   3'- gaCUGCGaCCAC-CU---GCACGUGUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 14945 0.76 0.395076
Target:  5'- gCUGGCGCUGGaagcgagcGGGCGUGcCugGGGCGa -3'
miRNA:   3'- -GACUGCGACCa-------CCUGCAC-GugUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 136572 0.73 0.526541
Target:  5'- -aGGCGCgGGUGGGCGgGCGCAgagacgcccGGCGc -3'
miRNA:   3'- gaCUGCGaCCACCUGCaCGUGU---------UCGU- -5'
23751 3' -55.2 NC_005261.1 + 73225 0.73 0.526541
Target:  5'- -gGGCGC-GGUGGccGCGaGCGCGAGCAg -3'
miRNA:   3'- gaCUGCGaCCACC--UGCaCGUGUUCGU- -5'
23751 3' -55.2 NC_005261.1 + 104661 0.73 0.536616
Target:  5'- --cGCGCUGGcGGGCGUGUGCugcGGCAg -3'
miRNA:   3'- gacUGCGACCaCCUGCACGUGu--UCGU- -5'
23751 3' -55.2 NC_005261.1 + 32372 0.73 0.546758
Target:  5'- -aGACGCUGGUGcaGGCGcgGCGCGgcGGCGu -3'
miRNA:   3'- gaCUGCGACCAC--CUGCa-CGUGU--UCGU- -5'
23751 3' -55.2 NC_005261.1 + 37870 0.72 0.59824
Target:  5'- -cGACGcCUGGcGGcGCGUGCugGAGCc -3'
miRNA:   3'- gaCUGC-GACCaCC-UGCACGugUUCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.