miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23751 5' -57.1 NC_005261.1 + 47294 0.66 0.880888
Target:  5'- gCCAC-UGUGCgagCacgaGCAUGG-CGGCc -3'
miRNA:   3'- aGGUGcACACGaa-Gg---CGUGCCuGCCG- -5'
23751 5' -57.1 NC_005261.1 + 82970 0.66 0.880888
Target:  5'- --gACGUgGUGCgcgUCgaGCACGGagGCGGCc -3'
miRNA:   3'- aggUGCA-CACGa--AGg-CGUGCC--UGCCG- -5'
23751 5' -57.1 NC_005261.1 + 113866 0.66 0.878078
Target:  5'- aCCuCGUGUGC-UCCGggugccaccuguaGCGGcgacGCGGCg -3'
miRNA:   3'- aGGuGCACACGaAGGCg------------UGCC----UGCCG- -5'
23751 5' -57.1 NC_005261.1 + 62225 0.66 0.878078
Target:  5'- gCCGCGUcUGCgcccucgcggugCUGCACGucCGGCg -3'
miRNA:   3'- aGGUGCAcACGaa----------GGCGUGCcuGCCG- -5'
23751 5' -57.1 NC_005261.1 + 10421 0.66 0.873798
Target:  5'- -aUACGgGUGCUgugCC-CACGGACGcGUg -3'
miRNA:   3'- agGUGCaCACGAa--GGcGUGCCUGC-CG- -5'
23751 5' -57.1 NC_005261.1 + 44878 0.66 0.873798
Target:  5'- gCCGCGa--GCg-CCGCGgGGAUGGCc -3'
miRNA:   3'- aGGUGCacaCGaaGGCGUgCCUGCCG- -5'
23751 5' -57.1 NC_005261.1 + 96043 0.66 0.866495
Target:  5'- gCCGCGUcccGC--CCGCuccaGGACGGCa -3'
miRNA:   3'- aGGUGCAca-CGaaGGCGug--CCUGCCG- -5'
23751 5' -57.1 NC_005261.1 + 135637 0.66 0.865753
Target:  5'- cUUCAUGcGcUGCUaCCugcgcggGCGCGGGCGGCc -3'
miRNA:   3'- -AGGUGCaC-ACGAaGG-------CGUGCCUGCCG- -5'
23751 5' -57.1 NC_005261.1 + 92457 0.66 0.865753
Target:  5'- aCCACGggcgucguccggaUGaGCggcaCCGCgagcucGCGGACGGCg -3'
miRNA:   3'- aGGUGC-------------ACaCGaa--GGCG------UGCCUGCCG- -5'
23751 5' -57.1 NC_005261.1 + 100721 0.66 0.858986
Target:  5'- gCCGCGgccGCgccgcgCgCGCGCGcGGCGGCg -3'
miRNA:   3'- aGGUGCacaCGaa----G-GCGUGC-CUGCCG- -5'
23751 5' -57.1 NC_005261.1 + 95555 0.66 0.858986
Target:  5'- gCCGCGcGUGCagcucucgUUCCGCuucAUGGGCcccGGCg -3'
miRNA:   3'- aGGUGCaCACG--------AAGGCG---UGCCUG---CCG- -5'
23751 5' -57.1 NC_005261.1 + 74571 0.66 0.858986
Target:  5'- aUCCACGcgGUcGCggaCCGCGucuucgugcCGGACGaGCg -3'
miRNA:   3'- -AGGUGCa-CA-CGaa-GGCGU---------GCCUGC-CG- -5'
23751 5' -57.1 NC_005261.1 + 31793 0.66 0.858986
Target:  5'- cCCGCGgcgcaGUGCg-CCGCGCGcuggccugaGCGGCg -3'
miRNA:   3'- aGGUGCa----CACGaaGGCGUGCc--------UGCCG- -5'
23751 5' -57.1 NC_005261.1 + 2569 0.66 0.858986
Target:  5'- --gGCGUGUGgUacUCC-C-CGGGCGGCa -3'
miRNA:   3'- aggUGCACACgA--AGGcGuGCCUGCCG- -5'
23751 5' -57.1 NC_005261.1 + 81222 0.66 0.851276
Target:  5'- aCCAcCGUG-GCgcCCGa--GGGCGGCg -3'
miRNA:   3'- aGGU-GCACaCGaaGGCgugCCUGCCG- -5'
23751 5' -57.1 NC_005261.1 + 104303 0.66 0.851276
Target:  5'- cCCGCGcGcGCUcaaagagCGCGCGGACGcGCg -3'
miRNA:   3'- aGGUGCaCaCGAag-----GCGUGCCUGC-CG- -5'
23751 5' -57.1 NC_005261.1 + 132363 0.66 0.851276
Target:  5'- gCCGCGgcgcGCUcgCCGCGCucGCGGCg -3'
miRNA:   3'- aGGUGCaca-CGAa-GGCGUGccUGCCG- -5'
23751 5' -57.1 NC_005261.1 + 116466 0.66 0.851276
Target:  5'- ---gUGUGUGUUuugCCgGCGCGGGCGGg -3'
miRNA:   3'- agguGCACACGAa--GG-CGUGCCUGCCg -5'
23751 5' -57.1 NC_005261.1 + 104446 0.66 0.851276
Target:  5'- cCCGCGUc-GCcgCCGC-CGG-CGGCg -3'
miRNA:   3'- aGGUGCAcaCGaaGGCGuGCCuGCCG- -5'
23751 5' -57.1 NC_005261.1 + 65848 0.66 0.848925
Target:  5'- gCCGCGaGUaGCggUCCGCGgCGGcuuguacagccccaGCGGCa -3'
miRNA:   3'- aGGUGCaCA-CGa-AGGCGU-GCC--------------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.