miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23752 3' -61.3 NC_005261.1 + 118634 0.66 0.687053
Target:  5'- cGCCGCGgcgGCGCucuGGGCccc-GGGCc -3'
miRNA:   3'- cCGGCGCacaCGCG---CCCGaacaCCCG- -5'
23752 3' -61.3 NC_005261.1 + 1007 0.66 0.687053
Target:  5'- gGGCgGgGg--GCgGgGGGCggGUGGGCu -3'
miRNA:   3'- -CCGgCgCacaCG-CgCCCGaaCACCCG- -5'
23752 3' -61.3 NC_005261.1 + 127759 0.66 0.687053
Target:  5'- gGGCCGCGgcggGCGCGaagacgcccGGCUgcucgagcgGcGGGCc -3'
miRNA:   3'- -CCGGCGCaca-CGCGC---------CCGAa--------CaCCCG- -5'
23752 3' -61.3 NC_005261.1 + 71 0.66 0.677242
Target:  5'- cGGCgCGCGcGgGgGCGGGgUgcgGGGCg -3'
miRNA:   3'- -CCG-GCGCaCaCgCGCCCgAacaCCCG- -5'
23752 3' -61.3 NC_005261.1 + 137754 0.66 0.677242
Target:  5'- cGGCgCGCGcGgGgGCGGGgUgcgGGGCg -3'
miRNA:   3'- -CCG-GCGCaCaCgCGCCCgAacaCCCG- -5'
23752 3' -61.3 NC_005261.1 + 77069 0.66 0.677242
Target:  5'- uGGCCG-GUGccGCGCGaGGCgc-UGGcGCg -3'
miRNA:   3'- -CCGGCgCACa-CGCGC-CCGaacACC-CG- -5'
23752 3' -61.3 NC_005261.1 + 16203 0.66 0.677242
Target:  5'- gGGCCGCGUGaugGCcuCGaGGCUcGgccagcccucgGGGCg -3'
miRNA:   3'- -CCGGCGCACa--CGc-GC-CCGAaCa----------CCCG- -5'
23752 3' -61.3 NC_005261.1 + 37431 0.66 0.668382
Target:  5'- cGCCGUG-GcGCGCGGGCUcgccgaagauauaagGcGGGUg -3'
miRNA:   3'- cCGGCGCaCaCGCGCCCGAa--------------CaCCCG- -5'
23752 3' -61.3 NC_005261.1 + 42891 0.66 0.667396
Target:  5'- uGGCCGgcucggcaCGUGacccgGCGCuccggggccgccGGGCgaGUGGGUg -3'
miRNA:   3'- -CCGGC--------GCACa----CGCG------------CCCGaaCACCCG- -5'
23752 3' -61.3 NC_005261.1 + 121500 0.66 0.667396
Target:  5'- gGGCgGCGg--G-GCGGGCaUG-GGGCc -3'
miRNA:   3'- -CCGgCGCacaCgCGCCCGaACaCCCG- -5'
23752 3' -61.3 NC_005261.1 + 70476 0.66 0.667396
Target:  5'- cGCCGCGgGUGCGCGcGC--GUGaGCa -3'
miRNA:   3'- cCGGCGCaCACGCGCcCGaaCACcCG- -5'
23752 3' -61.3 NC_005261.1 + 121437 0.66 0.667396
Target:  5'- gGGCgGCGg--G-GCGGGCaUG-GGGCc -3'
miRNA:   3'- -CCGgCGCacaCgCGCCCGaACaCCCG- -5'
23752 3' -61.3 NC_005261.1 + 51814 0.66 0.661475
Target:  5'- uGCUGCGgcugGUGCGCGccugccugcaccaccGGCgcaaGGGCa -3'
miRNA:   3'- cCGGCGCa---CACGCGC---------------CCGaacaCCCG- -5'
23752 3' -61.3 NC_005261.1 + 68685 0.66 0.657524
Target:  5'- cGCCGCGUGggggccgGCGCGGaCgacgGcGGCg -3'
miRNA:   3'- cCGGCGCACa------CGCGCCcGaacaC-CCG- -5'
23752 3' -61.3 NC_005261.1 + 98572 0.66 0.657524
Target:  5'- cGGCCGUccuc-CGCGGGCUc--GGGCg -3'
miRNA:   3'- -CCGGCGcacacGCGCCCGAacaCCCG- -5'
23752 3' -61.3 NC_005261.1 + 45617 0.66 0.657524
Target:  5'- cGGCgGCGcG-GCGCGGcGCggc-GGGCc -3'
miRNA:   3'- -CCGgCGCaCaCGCGCC-CGaacaCCCG- -5'
23752 3' -61.3 NC_005261.1 + 98479 0.66 0.657524
Target:  5'- cGGCCGUccuc-CGCGGGCUc--GGGCg -3'
miRNA:   3'- -CCGGCGcacacGCGCCCGAacaCCCG- -5'
23752 3' -61.3 NC_005261.1 + 108891 0.66 0.657524
Target:  5'- cGGCCGCGcUGccCGCcGGCgaGcgGGGCg -3'
miRNA:   3'- -CCGGCGC-ACacGCGcCCGaaCa-CCCG- -5'
23752 3' -61.3 NC_005261.1 + 118291 0.66 0.657524
Target:  5'- cGGCCGC-----CGCGGGCaccgGGGCg -3'
miRNA:   3'- -CCGGCGcacacGCGCCCGaacaCCCG- -5'
23752 3' -61.3 NC_005261.1 + 44307 0.66 0.648622
Target:  5'- gGGCCGC-UGccCGCGGGCgccgcagacgggGGGCu -3'
miRNA:   3'- -CCGGCGcACacGCGCCCGaaca--------CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.