miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23752 5' -51.6 NC_005261.1 + 20147 0.66 0.984519
Target:  5'- aGCGC--UCAGGcCGcGCCGGCUCUcugcUCg -3'
miRNA:   3'- -UGCGgaAGUUCuGCaUGGUCGAGA----AG- -5'
23752 5' -51.6 NC_005261.1 + 121096 0.66 0.984519
Target:  5'- aGCGCCUcCAGGcCGUGCgGGUccUCUa- -3'
miRNA:   3'- -UGCGGAaGUUCuGCAUGgUCG--AGAag -5'
23752 5' -51.6 NC_005261.1 + 94548 0.66 0.982552
Target:  5'- uCGCCUUCAGGA-GcGCCGGgUCg-- -3'
miRNA:   3'- uGCGGAAGUUCUgCaUGGUCgAGaag -5'
23752 5' -51.6 NC_005261.1 + 114052 0.66 0.982552
Target:  5'- gACGCCa--AGGACGUgGCgCGGCUCa-- -3'
miRNA:   3'- -UGCGGaagUUCUGCA-UG-GUCGAGaag -5'
23752 5' -51.6 NC_005261.1 + 76684 0.66 0.980403
Target:  5'- uCGCCgaCGAcGACGccgGCCuGUUCUUCg -3'
miRNA:   3'- uGCGGaaGUU-CUGCa--UGGuCGAGAAG- -5'
23752 5' -51.6 NC_005261.1 + 44073 0.66 0.980178
Target:  5'- gACGCCUUCcGGGCGUccgugguGCaCAGCaUCa-- -3'
miRNA:   3'- -UGCGGAAGuUCUGCA-------UG-GUCG-AGaag -5'
23752 5' -51.6 NC_005261.1 + 3342 0.66 0.975521
Target:  5'- cGCGCCgcggCGcccGGCGcGCCGGC-CUUCa -3'
miRNA:   3'- -UGCGGaa--GUu--CUGCaUGGUCGaGAAG- -5'
23752 5' -51.6 NC_005261.1 + 103465 0.66 0.975521
Target:  5'- cGCGCCcgucgcCAGGGCGU-CCAGCUg--- -3'
miRNA:   3'- -UGCGGaa----GUUCUGCAuGGUCGAgaag -5'
23752 5' -51.6 NC_005261.1 + 20837 0.66 0.975521
Target:  5'- uGCGCgUUCGcggGGgcaGCGUGgCGGCUCUUg -3'
miRNA:   3'- -UGCGgAAGU---UC---UGCAUgGUCGAGAAg -5'
23752 5' -51.6 NC_005261.1 + 118248 0.66 0.974988
Target:  5'- uACGCCgUCugcGGCGUGCCGGUgcacugcgcgcaCUUCg -3'
miRNA:   3'- -UGCGGaAGuu-CUGCAUGGUCGa-----------GAAG- -5'
23752 5' -51.6 NC_005261.1 + 93684 0.67 0.969804
Target:  5'- gGCGCCggCGGGGCGccgGCgGGUgccUCUUCc -3'
miRNA:   3'- -UGCGGaaGUUCUGCa--UGgUCG---AGAAG- -5'
23752 5' -51.6 NC_005261.1 + 43638 0.67 0.969804
Target:  5'- gGCGCCcguguggCGcGGCGgugACguGCUCUUCg -3'
miRNA:   3'- -UGCGGaa-----GUuCUGCa--UGguCGAGAAG- -5'
23752 5' -51.6 NC_005261.1 + 74028 0.67 0.966614
Target:  5'- cACGCCcagCAAGAUGgACCAGCg---- -3'
miRNA:   3'- -UGCGGaa-GUUCUGCaUGGUCGagaag -5'
23752 5' -51.6 NC_005261.1 + 18055 0.67 0.966614
Target:  5'- uCGCCggUCGAGuCGUccaggcCCAGCUCUg- -3'
miRNA:   3'- uGCGGa-AGUUCuGCAu-----GGUCGAGAag -5'
23752 5' -51.6 NC_005261.1 + 4146 0.67 0.966614
Target:  5'- cGCGCCgcugCAgcAGGCGcGCCAGCUg--- -3'
miRNA:   3'- -UGCGGaa--GU--UCUGCaUGGUCGAgaag -5'
23752 5' -51.6 NC_005261.1 + 8761 0.68 0.955633
Target:  5'- uGCGaaUUCuGGGAacCGUGCCAGCUCUg- -3'
miRNA:   3'- -UGCggAAG-UUCU--GCAUGGUCGAGAag -5'
23752 5' -51.6 NC_005261.1 + 20429 0.68 0.953174
Target:  5'- gGCGCCUUCccgggggggagcgcAGACGUGCCcgcgcggguguGGCgCUUCc -3'
miRNA:   3'- -UGCGGAAGu-------------UCUGCAUGG-----------UCGaGAAG- -5'
23752 5' -51.6 NC_005261.1 + 88193 0.68 0.951484
Target:  5'- gGCGCCggCGAGGCGggccgcGCCGGCa---- -3'
miRNA:   3'- -UGCGGaaGUUCUGCa-----UGGUCGagaag -5'
23752 5' -51.6 NC_005261.1 + 56742 0.68 0.95019
Target:  5'- gGCGCCUUCcu-GCGUgucgccuucaacacGCCGGC-CUUCu -3'
miRNA:   3'- -UGCGGAAGuucUGCA--------------UGGUCGaGAAG- -5'
23752 5' -51.6 NC_005261.1 + 21006 0.68 0.947083
Target:  5'- cGCGCCUUgGGGGCGUgacACCgAGCcCUg- -3'
miRNA:   3'- -UGCGGAAgUUCUGCA---UGG-UCGaGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.