Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23752 | 5' | -51.6 | NC_005261.1 | + | 3342 | 0.66 | 0.975521 |
Target: 5'- cGCGCCgcggCGcccGGCGcGCCGGC-CUUCa -3' miRNA: 3'- -UGCGGaa--GUu--CUGCaUGGUCGaGAAG- -5' |
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23752 | 5' | -51.6 | NC_005261.1 | + | 4146 | 0.67 | 0.966614 |
Target: 5'- cGCGCCgcugCAgcAGGCGcGCCAGCUg--- -3' miRNA: 3'- -UGCGGaa--GU--UCUGCaUGGUCGAgaag -5' |
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23752 | 5' | -51.6 | NC_005261.1 | + | 8761 | 0.68 | 0.955633 |
Target: 5'- uGCGaaUUCuGGGAacCGUGCCAGCUCUg- -3' miRNA: 3'- -UGCggAAG-UUCU--GCAUGGUCGAGAag -5' |
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23752 | 5' | -51.6 | NC_005261.1 | + | 12086 | 0.68 | 0.937511 |
Target: 5'- cGCGCCggggcggcUCaAAGGCGcggcGCCAGCUCUa- -3' miRNA: 3'- -UGCGGa-------AG-UUCUGCa---UGGUCGAGAag -5' |
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23752 | 5' | -51.6 | NC_005261.1 | + | 18055 | 0.67 | 0.966614 |
Target: 5'- uCGCCggUCGAGuCGUccaggcCCAGCUCUg- -3' miRNA: 3'- uGCGGa-AGUUCuGCAu-----GGUCGAGAag -5' |
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23752 | 5' | -51.6 | NC_005261.1 | + | 20147 | 0.66 | 0.984519 |
Target: 5'- aGCGC--UCAGGcCGcGCCGGCUCUcugcUCg -3' miRNA: 3'- -UGCGgaAGUUCuGCaUGGUCGAGA----AG- -5' |
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23752 | 5' | -51.6 | NC_005261.1 | + | 20429 | 0.68 | 0.953174 |
Target: 5'- gGCGCCUUCccgggggggagcgcAGACGUGCCcgcgcggguguGGCgCUUCc -3' miRNA: 3'- -UGCGGAAGu-------------UCUGCAUGG-----------UCGaGAAG- -5' |
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23752 | 5' | -51.6 | NC_005261.1 | + | 20837 | 0.66 | 0.975521 |
Target: 5'- uGCGCgUUCGcggGGgcaGCGUGgCGGCUCUUg -3' miRNA: 3'- -UGCGgAAGU---UC---UGCAUgGUCGAGAAg -5' |
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23752 | 5' | -51.6 | NC_005261.1 | + | 21006 | 0.68 | 0.947083 |
Target: 5'- cGCGCCUUgGGGGCGUgacACCgAGCcCUg- -3' miRNA: 3'- -UGCGGAAgUUCUGCA---UGG-UCGaGAag -5' |
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23752 | 5' | -51.6 | NC_005261.1 | + | 43638 | 0.67 | 0.969804 |
Target: 5'- gGCGCCcguguggCGcGGCGgugACguGCUCUUCg -3' miRNA: 3'- -UGCGGaa-----GUuCUGCa--UGguCGAGAAG- -5' |
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23752 | 5' | -51.6 | NC_005261.1 | + | 44073 | 0.66 | 0.980178 |
Target: 5'- gACGCCUUCcGGGCGUccgugguGCaCAGCaUCa-- -3' miRNA: 3'- -UGCGGAAGuUCUGCA-------UG-GUCG-AGaag -5' |
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23752 | 5' | -51.6 | NC_005261.1 | + | 44674 | 0.74 | 0.675148 |
Target: 5'- cGCGCCUg-GAGACGUACCucgcggAGCUCg-- -3' miRNA: 3'- -UGCGGAagUUCUGCAUGG------UCGAGaag -5' |
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23752 | 5' | -51.6 | NC_005261.1 | + | 45961 | 0.73 | 0.748063 |
Target: 5'- gGCGCCgUUGAGcauGCGcGCCAGCUCUUg -3' miRNA: 3'- -UGCGGaAGUUC---UGCaUGGUCGAGAAg -5' |
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23752 | 5' | -51.6 | NC_005261.1 | + | 56742 | 0.68 | 0.95019 |
Target: 5'- gGCGCCUUCcu-GCGUgucgccuucaacacGCCGGC-CUUCu -3' miRNA: 3'- -UGCGGAAGuucUGCA--------------UGGUCGaGAAG- -5' |
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23752 | 5' | -51.6 | NC_005261.1 | + | 74028 | 0.67 | 0.966614 |
Target: 5'- cACGCCcagCAAGAUGgACCAGCg---- -3' miRNA: 3'- -UGCGGaa-GUUCUGCaUGGUCGagaag -5' |
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23752 | 5' | -51.6 | NC_005261.1 | + | 76684 | 0.66 | 0.980403 |
Target: 5'- uCGCCgaCGAcGACGccgGCCuGUUCUUCg -3' miRNA: 3'- uGCGGaaGUU-CUGCa--UGGuCGAGAAG- -5' |
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23752 | 5' | -51.6 | NC_005261.1 | + | 80176 | 0.76 | 0.58965 |
Target: 5'- gUGCCgUUCGAG-CGUGCCAGCUCc-- -3' miRNA: 3'- uGCGG-AAGUUCuGCAUGGUCGAGaag -5' |
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23752 | 5' | -51.6 | NC_005261.1 | + | 88193 | 0.68 | 0.951484 |
Target: 5'- gGCGCCggCGAGGCGggccgcGCCGGCa---- -3' miRNA: 3'- -UGCGGaaGUUCUGCa-----UGGUCGagaag -5' |
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23752 | 5' | -51.6 | NC_005261.1 | + | 93252 | 0.69 | 0.926899 |
Target: 5'- uCGCCUUCGAccGGCGcGCCAGCg---- -3' miRNA: 3'- uGCGGAAGUU--CUGCaUGGUCGagaag -5' |
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23752 | 5' | -51.6 | NC_005261.1 | + | 93684 | 0.67 | 0.969804 |
Target: 5'- gGCGCCggCGGGGCGccgGCgGGUgccUCUUCc -3' miRNA: 3'- -UGCGGaaGUUCUGCa--UGgUCG---AGAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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