miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23753 3' -55.6 NC_005261.1 + 127714 0.66 0.896458
Target:  5'- aGCUGCGCGUGGccugccugguaGCGggagcuuggcgGcgGGAGCGg -3'
miRNA:   3'- gCGGCGCGCAUC-----------CGCaa---------CuaCUUCGC- -5'
23753 3' -55.6 NC_005261.1 + 102945 0.66 0.891131
Target:  5'- cCGCCGCuGCGgcGGCGgccGcgGgcGCc -3'
miRNA:   3'- -GCGGCG-CGCauCCGCaa-CuaCuuCGc -5'
23753 3' -55.6 NC_005261.1 + 11072 0.66 0.891131
Target:  5'- cCGCCaGCGCGUcuaGGGaCGg-GAcGggGCGg -3'
miRNA:   3'- -GCGG-CGCGCA---UCC-GCaaCUaCuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 98160 0.66 0.891131
Target:  5'- gGCCGCG-GgcGGCGggugUGuccuUGGAGCc -3'
miRNA:   3'- gCGGCGCgCauCCGCa---ACu---ACUUCGc -5'
23753 3' -55.6 NC_005261.1 + 117261 0.66 0.891131
Target:  5'- uCGCCGCGCGccucgAGGaCGgcGAgccuGGCGc -3'
miRNA:   3'- -GCGGCGCGCa----UCC-GCaaCUacu-UCGC- -5'
23753 3' -55.6 NC_005261.1 + 80053 0.66 0.891131
Target:  5'- uCGCCacuggcggcggGCGCGggGGGCGUgGggGAcGCGg -3'
miRNA:   3'- -GCGG-----------CGCGCa-UCCGCAaCuaCUuCGC- -5'
23753 3' -55.6 NC_005261.1 + 45938 0.66 0.890455
Target:  5'- cCGCCGCGCGcgAGGgccgccagggcgcCGUUGAgcauGCGc -3'
miRNA:   3'- -GCGGCGCGCa-UCC-------------GCAACUacuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 43094 0.67 0.884266
Target:  5'- aCGCCGCGCGcuacgAGGaCGUggcgcggGAUuGgcGCGc -3'
miRNA:   3'- -GCGGCGCGCa----UCC-GCAa------CUA-CuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 79856 0.67 0.884266
Target:  5'- cCGCCGCGC-UGGG-GUUGAgcuuGGCc -3'
miRNA:   3'- -GCGGCGCGcAUCCgCAACUacu-UCGc -5'
23753 3' -55.6 NC_005261.1 + 8805 0.67 0.884266
Target:  5'- aGCCGC-CGaGGGC-UUGAaGggGCGc -3'
miRNA:   3'- gCGGCGcGCaUCCGcAACUaCuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 67954 0.67 0.877176
Target:  5'- cCGCuCGCGCGgccgccGCGgcGAUGGAGUu -3'
miRNA:   3'- -GCG-GCGCGCauc---CGCaaCUACUUCGc -5'
23753 3' -55.6 NC_005261.1 + 101687 0.67 0.877176
Target:  5'- aGCCG-GCGaagcGGGCG-UGGUcGAAGCGc -3'
miRNA:   3'- gCGGCgCGCa---UCCGCaACUA-CUUCGC- -5'
23753 3' -55.6 NC_005261.1 + 78410 0.67 0.877176
Target:  5'- -uCCGUGCucuGUGGGCGaUGGggGggGCGa -3'
miRNA:   3'- gcGGCGCG---CAUCCGCaACUa-CuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 31306 0.67 0.877176
Target:  5'- cCGCCGCGCG-GGGCcc-GcgGgcGCGc -3'
miRNA:   3'- -GCGGCGCGCaUCCGcaaCuaCuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 57579 0.67 0.869864
Target:  5'- gCGCCGCGUugAGcGCGUcGAUGugccaccuGGCGg -3'
miRNA:   3'- -GCGGCGCGcaUC-CGCAaCUACu-------UCGC- -5'
23753 3' -55.6 NC_005261.1 + 90125 0.67 0.869864
Target:  5'- gGCC-CGCGgcgaGGGCGagGAggGggGCGa -3'
miRNA:   3'- gCGGcGCGCa---UCCGCaaCUa-CuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 118659 0.67 0.869864
Target:  5'- gGCCGCGCGcucgGGGC--UGAggGcGGCGg -3'
miRNA:   3'- gCGGCGCGCa---UCCGcaACUa-CuUCGC- -5'
23753 3' -55.6 NC_005261.1 + 38483 0.67 0.869864
Target:  5'- aGCaCGgcCGCGgcGGCGUcGAcUGGAGCGu -3'
miRNA:   3'- gCG-GC--GCGCauCCGCAaCU-ACUUCGC- -5'
23753 3' -55.6 NC_005261.1 + 121426 0.67 0.862337
Target:  5'- cCGCCGCuacgggGCGgcgGGGCGggcAUGggGCc -3'
miRNA:   3'- -GCGGCG------CGCa--UCCGCaacUACuuCGc -5'
23753 3' -55.6 NC_005261.1 + 15434 0.67 0.862337
Target:  5'- gGCCGgGCGcGGGCcGgcGAUGGAGa- -3'
miRNA:   3'- gCGGCgCGCaUCCG-CaaCUACUUCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.