miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23753 5' -57.9 NC_005261.1 + 126537 0.66 0.790832
Target:  5'- cGcCGCGCCucGG-CCACGCgCCgcCGUCg -3'
miRNA:   3'- aC-GCGUGGu-CCaGGUGCG-GGaaGUAG- -5'
23753 5' -57.9 NC_005261.1 + 19265 0.66 0.790832
Target:  5'- aGCGCGCgCGGGU--ACGCCag-CGUCu -3'
miRNA:   3'- aCGCGUG-GUCCAggUGCGGgaaGUAG- -5'
23753 5' -57.9 NC_005261.1 + 108369 0.66 0.789918
Target:  5'- gGCGCAucccugcCCGcGUCCGCGCCCgcgCGc- -3'
miRNA:   3'- aCGCGU-------GGUcCAGGUGCGGGaa-GUag -5'
23753 5' -57.9 NC_005261.1 + 65995 0.66 0.789003
Target:  5'- gGC-CACCAGGUCCgccuuuacgcGCGCCaccgccggcgCGUCg -3'
miRNA:   3'- aCGcGUGGUCCAGG----------UGCGGgaa-------GUAG- -5'
23753 5' -57.9 NC_005261.1 + 59575 0.66 0.78163
Target:  5'- cGCGCGCCgcagcGGGUgCCGCGCCg------ -3'
miRNA:   3'- aCGCGUGG-----UCCA-GGUGCGGgaaguag -5'
23753 5' -57.9 NC_005261.1 + 128715 0.66 0.78163
Target:  5'- gGCGCGcCCGGGcCC-CGCCCg----- -3'
miRNA:   3'- aCGCGU-GGUCCaGGuGCGGGaaguag -5'
23753 5' -57.9 NC_005261.1 + 68972 0.66 0.78163
Target:  5'- gUGCGCGCCA---CCGCGgCCCUUU-UCg -3'
miRNA:   3'- -ACGCGUGGUccaGGUGC-GGGAAGuAG- -5'
23753 5' -57.9 NC_005261.1 + 45631 0.66 0.78163
Target:  5'- gGCGCGgCGGGcCCGCGCCggagCAg- -3'
miRNA:   3'- aCGCGUgGUCCaGGUGCGGgaa-GUag -5'
23753 5' -57.9 NC_005261.1 + 105950 0.66 0.78163
Target:  5'- aGCGCGCCGucgauGGccUCgGCGCCCagcgcggCGUCg -3'
miRNA:   3'- aCGCGUGGU-----CC--AGgUGCGGGaa-----GUAG- -5'
23753 5' -57.9 NC_005261.1 + 1323 0.66 0.772293
Target:  5'- cGCGCuCCGGGacgccgccgcgCCGCGCCUgcaccagCGUCu -3'
miRNA:   3'- aCGCGuGGUCCa----------GGUGCGGGaa-----GUAG- -5'
23753 5' -57.9 NC_005261.1 + 65576 0.66 0.772293
Target:  5'- gUGcCGCACCuGGUCCGCGagcuCCUgcUCGc- -3'
miRNA:   3'- -AC-GCGUGGuCCAGGUGCg---GGA--AGUag -5'
23753 5' -57.9 NC_005261.1 + 77555 0.66 0.772293
Target:  5'- gGCGCcgccGCCAGuGgcgccgCCGCGCCCUggCAc- -3'
miRNA:   3'- aCGCG----UGGUC-Ca-----GGUGCGGGAa-GUag -5'
23753 5' -57.9 NC_005261.1 + 1367 0.66 0.772293
Target:  5'- cGCGgGCCcuGGUCCGCGUCCc----- -3'
miRNA:   3'- aCGCgUGGu-CCAGGUGCGGGaaguag -5'
23753 5' -57.9 NC_005261.1 + 104163 0.66 0.772293
Target:  5'- cGCGCcguCCGcGGgcgCCGCGCgCgggUCGUCg -3'
miRNA:   3'- aCGCGu--GGU-CCa--GGUGCGgGa--AGUAG- -5'
23753 5' -57.9 NC_005261.1 + 69637 0.66 0.772293
Target:  5'- cGUGCGCUAccUgCGCGCCCU-CGUCa -3'
miRNA:   3'- aCGCGUGGUccAgGUGCGGGAaGUAG- -5'
23753 5' -57.9 NC_005261.1 + 66137 0.66 0.772293
Target:  5'- aGCGCcgucACCAGGUUCA-GCCCcgagaUCAUg -3'
miRNA:   3'- aCGCG----UGGUCCAGGUgCGGGa----AGUAg -5'
23753 5' -57.9 NC_005261.1 + 1167 0.66 0.772293
Target:  5'- cGCGCGCC-GGcCCGCGCCg------ -3'
miRNA:   3'- aCGCGUGGuCCaGGUGCGGgaaguag -5'
23753 5' -57.9 NC_005261.1 + 99700 0.66 0.772293
Target:  5'- gGCGCGCCAgcuccgccacGGUCgCGCGCgUggccgCGUCa -3'
miRNA:   3'- aCGCGUGGU----------CCAG-GUGCGgGaa---GUAG- -5'
23753 5' -57.9 NC_005261.1 + 101266 0.67 0.76283
Target:  5'- aUGCGCuCCgcaaaGGGcUCCAUggGCCCgcggUCGUCg -3'
miRNA:   3'- -ACGCGuGG-----UCC-AGGUG--CGGGa---AGUAG- -5'
23753 5' -57.9 NC_005261.1 + 84413 0.67 0.76283
Target:  5'- cGCGCAgCAugucGG-CCGCGCCCUcCGg- -3'
miRNA:   3'- aCGCGUgGU----CCaGGUGCGGGAaGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.