miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23754 3' -53.6 NC_005261.1 + 100614 0.66 0.94951
Target:  5'- cGCgcaGGUGcAGGUCccgCUCGCACa- -3'
miRNA:   3'- uCGaa-CCGCuUCCAGaa-GAGCGUGag -5'
23754 3' -53.6 NC_005261.1 + 56550 0.66 0.945047
Target:  5'- cGGCU-GGUGGGcacGUcCUUCUCGCACcUCg -3'
miRNA:   3'- -UCGAaCCGCUUc--CA-GAAGAGCGUG-AG- -5'
23754 3' -53.6 NC_005261.1 + 95838 0.66 0.945047
Target:  5'- cGCUugugGGCGGA-GUCUUUg-GCACUCu -3'
miRNA:   3'- uCGAa---CCGCUUcCAGAAGagCGUGAG- -5'
23754 3' -53.6 NC_005261.1 + 74814 0.66 0.940333
Target:  5'- cGCgUGGCGGAGGUggccgC-CGUGCUCg -3'
miRNA:   3'- uCGaACCGCUUCCAgaa--GaGCGUGAG- -5'
23754 3' -53.6 NC_005261.1 + 104550 0.68 0.893465
Target:  5'- cAGCUUGGCGuccgccAGGUCgcccaGCGCUg -3'
miRNA:   3'- -UCGAACCGCu-----UCCAGaagagCGUGAg -5'
23754 3' -53.6 NC_005261.1 + 124773 0.68 0.892778
Target:  5'- aGGCUgagGaGCGggGGccCUUCcgacagccgcucgUCGCGCUCu -3'
miRNA:   3'- -UCGAa--C-CGCuuCCa-GAAG-------------AGCGUGAG- -5'
23754 3' -53.6 NC_005261.1 + 105294 0.68 0.871789
Target:  5'- gAGCccgGGCGcgcgagcgcGGGGUC--CUCGCACUCc -3'
miRNA:   3'- -UCGaa-CCGC---------UUCCAGaaGAGCGUGAG- -5'
23754 3' -53.6 NC_005261.1 + 12772 0.68 0.871789
Target:  5'- cGGCggUGGCGggGGg---CUCGUcggcgaGCUCg -3'
miRNA:   3'- -UCGa-ACCGCuuCCagaaGAGCG------UGAG- -5'
23754 3' -53.6 NC_005261.1 + 112924 0.7 0.8044
Target:  5'- cGCgagGGCGAGGG-Cgg--CGCGCUCg -3'
miRNA:   3'- uCGaa-CCGCUUCCaGaagaGCGUGAG- -5'
23754 3' -53.6 NC_005261.1 + 127804 0.7 0.766429
Target:  5'- cGGCgccgcGGCGgcGGgccgCUCGCGCUCg -3'
miRNA:   3'- -UCGaa---CCGCuuCCagaaGAGCGUGAG- -5'
23754 3' -53.6 NC_005261.1 + 18800 0.71 0.740613
Target:  5'- cGGCUUGaGCGgcGGcgggcaugauugcgcUCUcgugCUCGCGCUCg -3'
miRNA:   3'- -UCGAAC-CGCuuCC---------------AGAa---GAGCGUGAG- -5'
23754 3' -53.6 NC_005261.1 + 15067 0.72 0.65343
Target:  5'- cGGCggGGuCGggGGUCaggCUCGCcCUCg -3'
miRNA:   3'- -UCGaaCC-GCuuCCAGaa-GAGCGuGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.