miRNA display CGI


Results 21 - 40 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23754 5' -63.3 NC_005261.1 + 65821 0.66 0.59269
Target:  5'- cGGGCGgcGGCGcGAAgcugcccGAGUGCCG-CGAGu -3'
miRNA:   3'- -CCCGC--CCGC-CUU-------CUCGCGGCgGCUCu -5'
23754 5' -63.3 NC_005261.1 + 92140 0.66 0.590752
Target:  5'- cGGGCuGGGCcaGGAccucggcGAGCgcgcgcucgguggaGCCGCCGGGc -3'
miRNA:   3'- -CCCG-CCCG--CCUu------CUCG--------------CGGCGGCUCu -5'
23754 5' -63.3 NC_005261.1 + 118578 0.66 0.583977
Target:  5'- -cGCGcGGCGGcgc-GCGCCGCCGccgcGGAg -3'
miRNA:   3'- ccCGC-CCGCCuucuCGCGGCGGC----UCU- -5'
23754 5' -63.3 NC_005261.1 + 97681 0.66 0.583977
Target:  5'- gGGGCuuGGGCGGG-----GCUGCCGGGGc -3'
miRNA:   3'- -CCCG--CCCGCCUucucgCGGCGGCUCU- -5'
23754 5' -63.3 NC_005261.1 + 100042 0.66 0.583977
Target:  5'- -cGCGGGCGucagcucGAGcGCGCCGCCGc-- -3'
miRNA:   3'- ccCGCCCGCc------UUCuCGCGGCGGCucu -5'
23754 5' -63.3 NC_005261.1 + 31562 0.66 0.583977
Target:  5'- uGGGcCGGGUccuGGAcGGGCGC-GCCGGa- -3'
miRNA:   3'- -CCC-GCCCG---CCUuCUCGCGgCGGCUcu -5'
23754 5' -63.3 NC_005261.1 + 1854 0.66 0.583977
Target:  5'- aGGcGcCGGGCccGAAGAcGCGCCG-CGAGGc -3'
miRNA:   3'- -CC-C-GCCCGc-CUUCU-CGCGGCgGCUCU- -5'
23754 5' -63.3 NC_005261.1 + 18124 0.66 0.583977
Target:  5'- -aGCGGGgGGAAGcAGCcgcaggcccaGUCGCCGAu- -3'
miRNA:   3'- ccCGCCCgCCUUC-UCG----------CGGCGGCUcu -5'
23754 5' -63.3 NC_005261.1 + 128515 0.66 0.583011
Target:  5'- cGGCGGaggcagccuccugGCGGcuGGAGUGCUGCUGcGAa -3'
miRNA:   3'- cCCGCC-------------CGCCu-UCUCGCGGCGGCuCU- -5'
23754 5' -63.3 NC_005261.1 + 9137 0.66 0.574326
Target:  5'- gGGGCGGGUgcaggcaaaucGGGcugGGAccugGCGCCGCCcGGc -3'
miRNA:   3'- -CCCGCCCG-----------CCU---UCU----CGCGGCGGcUCu -5'
23754 5' -63.3 NC_005261.1 + 14213 0.66 0.574326
Target:  5'- cGGGCGcaccaacgcGcGCGGugAAGAccGCGCCGgCCGGGGc -3'
miRNA:   3'- -CCCGC---------C-CGCC--UUCU--CGCGGC-GGCUCU- -5'
23754 5' -63.3 NC_005261.1 + 67827 0.66 0.574326
Target:  5'- cGGGCGcGCGcAGGAGgGCCgcacucuccggGCCGAGc -3'
miRNA:   3'- -CCCGCcCGCcUUCUCgCGG-----------CGGCUCu -5'
23754 5' -63.3 NC_005261.1 + 98000 0.66 0.574326
Target:  5'- uGGGa-GGCGGcGGGGGCGCUGgCGGcGAg -3'
miRNA:   3'- -CCCgcCCGCC-UUCUCGCGGCgGCU-CU- -5'
23754 5' -63.3 NC_005261.1 + 98603 0.66 0.574326
Target:  5'- cGGCGcccgcaaaauccGGCGGGuauGCGUCGCCGAu- -3'
miRNA:   3'- cCCGC------------CCGCCUucuCGCGGCGGCUcu -5'
23754 5' -63.3 NC_005261.1 + 136864 0.66 0.574326
Target:  5'- cGGCaGGGCaGGAuggcguaGGCGCgGCCGAuGAa -3'
miRNA:   3'- cCCG-CCCG-CCUuc-----UCGCGgCGGCU-CU- -5'
23754 5' -63.3 NC_005261.1 + 81981 0.66 0.574326
Target:  5'- cGGCGGcuGCGcGAAGuugugcGCGCUGCCGucGAa -3'
miRNA:   3'- cCCGCC--CGC-CUUCu-----CGCGGCGGCu-CU- -5'
23754 5' -63.3 NC_005261.1 + 74348 0.66 0.574326
Target:  5'- aGGCGcggcGGCGGAAGGG-GCgGCCGc-- -3'
miRNA:   3'- cCCGC----CCGCCUUCUCgCGgCGGCucu -5'
23754 5' -63.3 NC_005261.1 + 55218 0.66 0.564712
Target:  5'- cGGCGgcccgaGGCGGcGAGGGCggcagcaccgcaGCCGCCGcGAg -3'
miRNA:   3'- cCCGC------CCGCC-UUCUCG------------CGGCGGCuCU- -5'
23754 5' -63.3 NC_005261.1 + 71628 0.66 0.564712
Target:  5'- cGGGCccGGGCGGcGGGAaaaCGCCGCCc--- -3'
miRNA:   3'- -CCCG--CCCGCC-UUCUc--GCGGCGGcucu -5'
23754 5' -63.3 NC_005261.1 + 81451 0.66 0.564712
Target:  5'- cGGCGGGCGccgccagcaGcAGGGCccacGCCGCCcAGAg -3'
miRNA:   3'- cCCGCCCGC---------CuUCUCG----CGGCGGcUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.