miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23755 3' -63.2 NC_005261.1 + 98263 0.66 0.584946
Target:  5'- cGCgUCAGGCgGCGcgcgcguucgacGCCCGGCGcGUCc-- -3'
miRNA:   3'- -CGgAGUCCG-CGC------------CGGGUCGC-CAGcac -5'
23755 3' -63.2 NC_005261.1 + 4557 0.66 0.575227
Target:  5'- gGCCUuggcuggauccgCGGGCG-GGUCCGGCGGggCGc- -3'
miRNA:   3'- -CGGA------------GUCCGCgCCGGGUCGCCa-GCac -5'
23755 3' -63.2 NC_005261.1 + 115424 0.66 0.575227
Target:  5'- aGCCg-GGGcCGCGGCCCGagcucgcgcucGCGGcCGg- -3'
miRNA:   3'- -CGGagUCC-GCGCCGGGU-----------CGCCaGCac -5'
23755 3' -63.2 NC_005261.1 + 98120 0.66 0.575227
Target:  5'- aGgCUgGGGacgcCGCGGCaCCGGCGGcCGUc -3'
miRNA:   3'- -CgGAgUCC----GCGCCG-GGUCGCCaGCAc -5'
23755 3' -63.2 NC_005261.1 + 28780 0.66 0.575227
Target:  5'- gGCCgcggcgCGGGCgcucGCGGCCgCGGCGGagGc- -3'
miRNA:   3'- -CGGa-----GUCCG----CGCCGG-GUCGCCagCac -5'
23755 3' -63.2 NC_005261.1 + 53582 0.66 0.575227
Target:  5'- gGCCgCGGGCcgGCGGCgccCCAGCGGaccgacgaggcCGUGg -3'
miRNA:   3'- -CGGaGUCCG--CGCCG---GGUCGCCa----------GCAC- -5'
23755 3' -63.2 NC_005261.1 + 21806 0.66 0.575227
Target:  5'- cGCCggcCGGGcCG-GGCCCgcGGCGGgcgcgCGUGc -3'
miRNA:   3'- -CGGa--GUCC-GCgCCGGG--UCGCCa----GCAC- -5'
23755 3' -63.2 NC_005261.1 + 93901 0.66 0.575227
Target:  5'- cGCCagcgacugCGGGCGCGGCgCCcGCGGg---- -3'
miRNA:   3'- -CGGa-------GUCCGCGCCG-GGuCGCCagcac -5'
23755 3' -63.2 NC_005261.1 + 54324 0.66 0.574256
Target:  5'- aGCa--AGGCGUGGCCgAGCgcguacaGGUCGaUGg -3'
miRNA:   3'- -CGgagUCCGCGCCGGgUCG-------CCAGC-AC- -5'
23755 3' -63.2 NC_005261.1 + 96989 0.66 0.571349
Target:  5'- gGCCUC-GGCGCGGCUaagcgcgccauugGGCGGgcCGUc -3'
miRNA:   3'- -CGGAGuCCGCGCCGGg------------UCGCCa-GCAc -5'
23755 3' -63.2 NC_005261.1 + 103920 0.66 0.56651
Target:  5'- cGCCaggUCGGGCGCGGCgucugccagacgcugCAGCGGcgCGa- -3'
miRNA:   3'- -CGG---AGUCCGCGCCGg--------------GUCGCCa-GCac -5'
23755 3' -63.2 NC_005261.1 + 93206 0.66 0.559755
Target:  5'- aGCCUCGGGCuccagcagcgccagcGCGGCaaaaaAGCGGcCGc- -3'
miRNA:   3'- -CGGAGUCCG---------------CGCCGgg---UCGCCaGCac -5'
23755 3' -63.2 NC_005261.1 + 123906 0.66 0.555904
Target:  5'- cGCCgcugugGGGUGCGGCCCgAGCaGGUgCGc- -3'
miRNA:   3'- -CGGag----UCCGCGCCGGG-UCG-CCA-GCac -5'
23755 3' -63.2 NC_005261.1 + 23556 0.66 0.555904
Target:  5'- aGCCgucgCAGGUGgGGCagGGCuGGcCGUGg -3'
miRNA:   3'- -CGGa---GUCCGCgCCGggUCG-CCaGCAC- -5'
23755 3' -63.2 NC_005261.1 + 93538 0.66 0.555904
Target:  5'- aGCC-CGcGCGCGccGCCCaguAGCGGUCGa- -3'
miRNA:   3'- -CGGaGUcCGCGC--CGGG---UCGCCAGCac -5'
23755 3' -63.2 NC_005261.1 + 64895 0.66 0.555904
Target:  5'- cGCCggguccagCAGcGCGUGGUUCAGCGcGgCGUGc -3'
miRNA:   3'- -CGGa-------GUC-CGCGCCGGGUCGC-CaGCAC- -5'
23755 3' -63.2 NC_005261.1 + 68863 0.66 0.546313
Target:  5'- cCCUCuGcCGCGGCUguGCGccGUCGUGc -3'
miRNA:   3'- cGGAGuCcGCGCCGGguCGC--CAGCAC- -5'
23755 3' -63.2 NC_005261.1 + 23331 0.66 0.546313
Target:  5'- aGCCgacgAGcGCGCGGCgCAGCGcGcgCGUGu -3'
miRNA:   3'- -CGGag--UC-CGCGCCGgGUCGC-Ca-GCAC- -5'
23755 3' -63.2 NC_005261.1 + 115468 0.66 0.546313
Target:  5'- cGCCUCggugucggucgcGGGCuCGGCCgCGGCGG-CGc- -3'
miRNA:   3'- -CGGAG------------UCCGcGCCGG-GUCGCCaGCac -5'
23755 3' -63.2 NC_005261.1 + 92315 0.66 0.546313
Target:  5'- cGCCgcgCGGuccGCGCGGCCCAuccGCGGgccacCGg- -3'
miRNA:   3'- -CGGa--GUC---CGCGCCGGGU---CGCCa----GCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.